Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3047 ATGCCGCTTCCGGCGAAATCAACGAGACCGCCTCAATTGGATTCCGACGAGTTAGGCTCGCCGTCGAACAACCTTTGGGTCGGTAACCTGGCGCCGGAGGTAACCGACGCCGATCTGATGGACCTGTTCGCGCAGTACGGCGCTCTCGACAGCGTCACGTCGTACTCGTCCCGCAGCTACGCGTTCGTGTACTTCAAGCGCGTCGAGGACGCCAAGGCCGCCAAGAACGCACTCCAAGGGTTCTCTCTCCGCGGCAATTCCTTGAAGATCGAATTTGCCAGACCGGCAAAGCCTTGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTGACAAAGGAAGATTTGGAAGCTGAATTTCATAAATTTGGTAAAATTGAGGATTTTAAGTTCTTTAGGGACCGAAATACTGCTTGTGTCGAATTTTTCAATCTGGACGATGCTACTCAGGCAATGAAAATCATGAATGGGAAACGTTTAGGTGGGGAACATATTCGTGTCGACTTCCTTCGATCACATTCTTCCAAGAAAGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTTGGGCCTACTGACTCCTACACTGGACAGAAAAGACCACTGCATTCACAGCCTTCAATGGGGAGGAAAGGTGATGGTCAGCCCAGTAATATTTTATGGATAGGTTATCCTTCGGCTGTGCAGATTGACGAGCAAATGCTCCACAACGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCGTTTGTTGAATTTAGAAGTGTCGATGAAGCTCGGCGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTCAATGATCCTCGAATAATGATTATGTATTCAAGCAGTGATATAGTAAATGGAAAAGATTACCCTGGCTTATATGCTGCAAGTACTGGGCCAAGAGCTGACATGTTCCTGAATGAGCATCCATTTCGACCATTACAAATGGATGTATATGGTCATAATCGTCCAATGGGTCCAAATAATTTTCCCGGGCAGTTACCATCGGGTGGCATTGGTGGACAAAATGTACCAATGAGGCCTTTTGGTCCTCAAGGCAGTCTTGATCCTCTTATTTCTGGGCCTGAGTTTAATGAGATGGGCACTCTCCACAAATTTCAGGATGGTAGCTCCAAAAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCCCCAGGGATGCTTCCTCCCTCTCCTGCACCTGGGGTTAGGCTTCCTCCAAGATCAGCCTCTGGTGCATGGGATGTACTAGATATAAACCATATTCCAAGAGATTCTAAACGTTTGAGGATAGATGGTACTTTGCCTGTTGATGATGCGCCATTTCCTTTAAGGAATATAGATGATCGTGGATTAGGTATAGAACAAACATATGGGATTGATCCAGTGAGCACAAGGACCACAGCGGGAGTACATGGTTCTACACAATCTGATATTGATCATATATGGCGTGGAATCATTGCAAAAGGTGGAACTCCTGTTTGTCATGCTAGATGTGTCCCTATTGGAAAAGGGATAGCGACTGAGCTGCCTGACGTTGTTGACTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGACGCAATTGGTTTTGACATTGTTTTCTTTCTGCCAGATAGCGAAGATGATTTTGCTTCATATACTGAATTCCTTCGCTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTGTTCTTGGTACCTCCTTCTGATTTCCTGTCAAAAGTTTTGAAAGTCACGGGACCGGAACGTCTTTATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGCAGTGCACCAGGGCAACAACCATCGCATTTGCCTATACCATCAACTCAGTACATGCAGCAGATTCTTCCTTCACAAGCTGAGTATGGTTCGATCCCTCCTAAGGAAGAACCGGTTTTGCCAATGGATTACAACAGATTGTTGCATGAGGAGTCTAAGCTTCCTCCTAAGCCGGTCTATCCAGCTGCAAGTGGCCCTCCTTCAGTTCAAGCTCTGCCTCCAGATTATGCTCCTAGTACTACTGCTTCTGGGTCCCAAGCTGGGGTTTCATTGACACCCGAGCTTATTGCAGCTTTAACTTCTTTAGTCCCTTCAACTACACAGTCATCTGCAACTGATGGTGCCAAGTCTGCAGTAGGCTCCTCAACCATGAAGCCTCCATTTCCTCCTGTTGCACCCAATGATGGTAACCAATCTCATTTATGGAAACAGGACCATCAAATTGCTGATCAATCCATTCATCCTCCTCCACAGTTGGGGAGCATGTATAACATTCACAATGCTCACTATCAGCCTTATCCACCACCATCTGTGCCTGGCCACCCTTCTCAGGTGGTGTCTGGCAGTTCCCATATCCAAGATACTGCTGCTGGCCTGCAGCAGCAGGGTGCTGTTCCATCTAGACAGATGACTAATTTTATGATGACTTCTCAAAGTGGACAGGTAGCTGCACCCCCCCATGTCAATCAACAGTATCAGGTTGAAGTCTCCCCCAGCAATCAGAAAGGCTTTGGTGTGATGCAGGGAACAGATGCCTCTGTTTTATACAATCCTCAGGCTTTCCAGCAACCAAATAATTCTATCATTTCATCTAATCAAGTTCACAGTGCTAATCCTTCACAACAAAGTGTCATGCCATATACAGTGGACCAAGTAAACACAGACCCTTCGAGTCAGCAACTTCCTCTCTTTGGAGTTGGTCAGGGAACGGAAGTTGAGGCTGATAAGAACCAAAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCCTCCAAATACAGCAGCAGCAACAGCAAACCCCAGGAGGACATGGGCCAGGAATTCAACAATGA 2916 0.4633 MPLPAKSTRPPQLDSDELGSPSNNLWVGNLAPEVTDADLMDLFAQYGALDSVTSYSSRSYAFVYFKRVEDAKAAKNALQGFSLRGNSLKIEFARPAKPCKQLWVGGISPAVTKEDLEAEFHKFGKIEDFKFFRDRNTACVEFFNLDDATQAMKIMNGKRLGGEHIRVDFLRSHSSKKDQLLDYGQFQGKSFGPTDSYTGQKRPLHSQPSMGRKGDGQPSNILWIGYPSAVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIMIMYSSSDIVNGKDYPGLYAASTGPRADMFLNEHPFRPLQMDVYGHNRPMGPNNFPGQLPSGGIGGQNVPMRPFGPQGSLDPLISGPEFNEMGTLHKFQDGSSKSNMGPNWKRPSPPAPGMLPPSPAPGVRLPPRSASGAWDVLDINHIPRDSKRLRIDGTLPVDDAPFPLRNIDDRGLGIEQTYGIDPVSTRTTAGVHGSTQSDIDHIWRGIIAKGGTPVCHARCVPIGKGIATELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLSKVLKVTGPERLYGVVLKFPPVPSSAPGQQPSHLPIPSTQYMQQILPSQAEYGSIPPKEEPVLPMDYNRLLHEESKLPPKPVYPAASGPPSVQALPPDYAPSTTASGSQAGVSLTPELIAALTSLVPSTTQSSATDGAKSAVGSSTMKPPFPPVAPNDGNQSHLWKQDHQIADQSIHPPPQLGSMYNIHNAHYQPYPPPSVPGHPSQVVSGSSHIQDTAAGLQQQGAVPSRQMTNFMMTSQSGQVAAPPHVNQQYQVEVSPSNQKGFGVMQGTDASVLYNPQAFQQPNNSIISSNQVHSANPSQQSVMPYTVDQVNTDPSSQQLPLFGVGQGTEVEADKNQRYQSTLQFAANLLLQIQQQQQQTPGGHGPGIQQ* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3047 971 Gene3D - 216 303 IPR012677 -
Dod03g3047 971 MobiDBLite consensus disorder prediction 675 706 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 191 215 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 191 205 - -
Dod03g3047 971 Pfam SPOC domain 489 607 IPR012921 -
Dod03g3047 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723
Dod03g3047 971 Gene3D - 4 98 IPR012677 -
Dod03g3047 971 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 970 - -
Dod03g3047 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 293 IPR000504 GO:0003723
Dod03g3047 971 Gene3D - 99 215 IPR012677 -
Dod03g3047 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 970 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 1 20 - -
Dod03g3047 971 CDD RRM3_Spen 102 171 - -
Dod03g3047 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 89 IPR000504 GO:0003723
Dod03g3047 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 165 IPR000504 GO:0003723
Dod03g3047 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 285 IPR000504 GO:0003723
Dod03g3047 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Dod03g3047 971 CDD RRM3_Spen 25 94 - -
Dod03g3047 971 SUPERFAMILY RNA-binding domain, RBD 203 294 IPR035979 GO:0003676
Dod03g3047 971 MobiDBLite consensus disorder prediction 398 413 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 724 759 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 386 413 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 679 693 - -
Dod03g3047 971 SUPERFAMILY RNA-binding domain, RBD 21 174 IPR035979 GO:0003676
Dod03g3047 971 SMART rrm1_1 24 91 IPR000504 GO:0003723
Dod03g3047 971 SMART rrm1_1 221 289 IPR000504 GO:0003723
Dod03g3047 971 SMART rrm1_1 101 168 IPR000504 GO:0003723
Dod03g3047 971 MobiDBLite consensus disorder prediction 771 808 - -
Dod03g3047 971 CDD RRM3_Spen 222 291 - -
Dod03g3047 971 MobiDBLite consensus disorder prediction 724 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3047 Dod-Chr3 63227206 63237899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3047 22 283 Eukaryotic Initiation Factors Gene Family AT4G34110 22.997 3.09e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3047 - - gmx:100777570 1562.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1832 10 39772372 39776017 Dod03g3047 03 63227206 63237899 PCT