Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3040 ATGAAGATTCAGTGTGATGTGTGTGAGAAAGCTCAAGCAACAGTGATCTGTTGCGCAGATGAAGCAGCTTTGTGTGCCAAGTGTGATGTTGAGGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAATGTCTCTCAAACAAGCTTCCCAGATGTGATATATGCCAAGATAAGGCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGTAAGGATTGCGACGCACCAATTCATTTAGCCGGTAGCCTTTCTGCGAACCATCAGCGGTTCCTTGCTACTGGTATACGAGTGGCTCTGGGCTCCAATAAAGGCGACGAAAAAAGTCACTTGGAACCATCTAATCCGAGTGTGCAACAAGTTCCCTCCCAGCAAGTGCCTAGCATCACATCGCCTTGGGCTGTTGATGAACTGTTGGACTTAACAAACTTTGAATCACCAGAAAAAAAGCAGACTGAGGAATTTGGAGAGCTGGAATGGCTAGCAGACGTAGGTCTTTTTGACGAAACTTTAGCAGCAGCTGAAGTTCCTCAGCTTCCAGTGACACACACTAGCAATGTTGCCTCATACAAAGCCAATAAATCCTATATGTCTAACAAAAAGCCTAGGATGGAAGTACTAGTTGAAGATGATGAGCACTTCACTGTGCCTGATCTTGGCTAA 681 0.4523 MKIQCDVCEKAQATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDAPIHLAGSLSANHQRFLATGIRVALGSNKGDEKSHLEPSNPSVQQVPSQQVPSITSPWAVDELLDLTNFESPEKKQTEEFGELEWLADVGLFDETLAAAEVPQLPVTHTSNVASYKANKSYMSNKKPRMEVLVEDDEHFTVPDLG* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3040 226 CDD Bbox1_BBX-like 57 98 - -
Dod03g3040 226 MobiDBLite consensus disorder prediction 110 132 - -
Dod03g3040 226 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dod03g3040 226 MobiDBLite consensus disorder prediction 118 132 - -
Dod03g3040 226 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Dod03g3040 226 Gene3D Classic Zinc Finger 1 96 - -
Dod03g3040 226 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod03g3040 226 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dod03g3040 226 SMART bboxneu5 52 99 IPR000315 GO:0008270
Dod03g3040 226 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 226 - -
Dod03g3040 226 CDD Bbox1_BBX-like 5 47 - -
Dod03g3040 226 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3040 Dod-Chr3 63192644 63196400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3040 1 155 Orphan Transcription Factor Family AT1G06040 62.500 4.62e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod03g3040 zf-B_box 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3040 - - gmx:100779183 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1824 10 39734113 39736375 Dod03g3040 03 63192644 63196400 PCT