Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3033 ATGGGGCAGAGTTCGAAGAAGAAGAAGAAGAAGAAGAACCGCGGCGGAGGAGGAGGAGGCAAGAATAAGGATCACCTTTCTCAATCTGCCGCCAATGACTCTGAACAACTCCTCTCCGAAGAGATCACTGCTTTATGTGCGATTTTCCAAGAGGATTGCAAGGTTCTTCCCGCTTCACCTGCTCAGATACTTATCAAGCTCAGGCCTTACTCTAAGGACATGGGTTATGAGGACTTGGATGTTTCTGCCCTTCTTCTTGTCAGGTGCTTACCTGGGTATCCTTTCAAGTGCCCCAAGTTGCAGATTACTCCCGAGGATGGCTTATCAGAAAGTGATGCCGATAAACTTTTGTCTGTCCTCCATGATCAGGCTAATTTAAATGCTAGGGAGGGGCGAGTAATGATCTTTAATTTGGTTGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCAATTGCCAAATCAACTGAATCTAAGCCTTTGTACTCAACTAAGGAAAGCAATGAAGAATTGTTTCTCAAGGATATGGCATCTTCAAATAAAATTAGATCTTTTGTTTATGGTTTCATAGACCTTTTCAGTGGTTATGGAGAGTCATGGAATTGGGGTTTTGGAATGGATGAAACTGCTGGAAAAACTTCTTCTCTTCCTCCCCCTAAGATAGATGCCTCAAAACATGGTTTTGAGGCCCGTGAAAAGAAATCTGATAGCAAGGAAAAGCCATTAATAATGCAAGAACTTCCTGCCAAATTAGATACAGTTGGAGAAGTTAGCGAAGACAGCAACAATAGCATATCCCTCGCTAATTCAAGTAGATCTCTGGGGGAGGATCTTGTAGGGAGTGACAATGAAGGTGAGAAAGAGGATTTTATCTTTGCTGAGGACGCAACAGAAGATAATGAAGATATGTATGAAAGCGTGTCCTCAGAGTCTCTATCTTCTGCCTCCTTGGCTCACCACCAAGCATCTCAAACAGTTGAAAAGGATCTTATAATGGTTCACTTGCTTCGTCTTTGTGCTTCTAAAGGAACACTGGTTGAATCTTTGCCACAAGTAGCAACAGAGCTGTTCAACTTAGGGATCGTTTCTGATTGGGCACGTGATATGGCATCTAGACCACCTTCCATTTTTAACAAAACATTTGATCATGCTTTCCAGAAACATGTGGCTTCATCCAGAATATCTCAATTTTGGAAACCTTCTTCTGATCTTGGTGGTTCAAATACAGTTCCACATAGTTCTCGTTATTTGAATGATTTCGAGGAGCTACGGCCTCTTGGTCATGGTGGTTTTGGCCATGTTGTGTTGTGCAAAAATAAACTTGATGGAAGGCAGTATGCAGTAAAGAAAATTCGCATTAAGGACAAAACCATGCCTGACCGCATATTAAGGGAAGTAGCCACTCTTTCACGTTTGCAGCATCAACATGTTGTTAGATATCATCAGGCATGGTTTGAAACTGGAGTTACTGATTCTTACGGTGATGCTGCTTGGGGTTCCATGACTCCACTAAGCTCCACTTTCAGCTGTAAAGCTGCAAGCTCAAACGATGCCGTTGGGCATGAGAATCAGCTTGAATCAACATACCTTTATATACAAATGGAGTACTGTCCTAGGACTCTTCGCCAGAAGTTTGAATCATATAGTCATTTTGACAAAGAGCTGGCATGGCATCTGTTTCGTCAAATAGTGGAAGGTTTGGCGCACATACATGGACAGGGAATAATTCATCGGGACTTGACACCAAGTAACATCTTCTTTGATGCTCGTAATGATATTAAAATTGGTGATTTTGGTCTAGCCAAGTTCTTGAAGTTGGAGCAGCTAGATCAAGATCTTGGTCATCCCGCTGATGCAACTGGAGTTTCTATTGATGGCACTGGGCAAGTGGGGACTTATTTCTATACAGCTCCTGAAATTGAACAAGGATGGCCCAAGATTGATGAAAAGGCAGATATGTACAGTTTAGGCGTGGTTTTCTTTGAACTTTGGCACCCGTTTGGAACAGCAATGGAGAGACATGTTGTGTTATCCAATTTGAAACAGAAGGGAGAACTTCCTCCTGTGTGGGTTGCTCGGTTTCCAGAACAAGAGTCCTTATTGCGGAAGTTAATGTCTCCTGGTCCTTCTGATCGTCCTTCTGCCACAGAACTTCTGCATAATGCATTTCCCCCACGAATGGAATCCGAATTATTGGATGATATCCTACGAACAATGCAGAAGTCAGAGGATACGAGCATATATGATAAAGTTGTCAATGCTATCTTTGATGAAGAGATGTTGAGCACAAAACACATTCATCAAGCGGGTAGACTGGGGACGATTGGAGATAATAGTTCATCTATTCAGCACACAGATTTTGAAACTGAGGTTCGAGATTATGTTGTAGATGTGAGCAGGGAAATTTTCAGACTGCATTGTGCAAAGCATCTAGAAATTTTAACAATGCGATTATTGGAAGATTGTCCACAGTTTAACAGAAATGCTGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCCATGAGCTGCGTTTGCCTTTTGTAAACTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTCTACAGAAGAGCAGTTGGACATTCGTCGCCAAACCGATACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAGGCAGAAGTCATAAAGGTGACAAGGGACATAGTCACTTGTTTTTTCCATGCAGACTCATGTGACATTCATCTAAACCATGGTGAACTACTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACACAGACTTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCACAATCCTCAGAAAGGAAATCAAAATGGGTAGTGATAAGGCGGCAGCTTTTGCAGGAGCTGAATTTAGCAGAAGCTATGGTAAATAGACTGCAGACAGTTGGTTTAAGATTTTGTGGATTTGCAGATCAGGCACTTCCCAGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATGCAAGGCACTTGATGAATTGTCTGAGCTCTTCAGTCTCTTGAGAATTTGGAGGATTGACAAAAACGTCTATATTGATGCATTAATGCCACCAACGGAAAGTTATCATAGAGATTTATTTTTTCAGGTGTACTTAAGGAAGGAGAACAATCCTGGGTCGCTGTCTGAAGGTGCCTTGCTAGCTGTAGGTGGTCGCTATGACTATTTGCTTCATCAGTTGTGGAGTCATGATTATAGAGGAAGTCCTCCCAGTGGTGTGGGGAGTAGCCTTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGACTTTAAGCCCATTAGAAATGAAGCCAGCACCAATATTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTGTTGGTGGAGCGCATGGAACTAGTTGCTGAATTATGGGAGGAGAACTTTAAGGCTGAATTTGTTCTCACTCCTGATCCAAGTCTTACAGAGCAGTACGAGTATGCTAATGAACATGATATCAAATGTCTCGTCATTATCACAGATGCAGGTGTCTCGCAGACAGGTTATGTTAAGGTTCGGCACCTTGAACTTAAGAGGGAGAAAAACGTTGAGAGAGAAAACCTCGTCAAGTTTCTGTCAGATGCTATGGCAACACAGTTTAGAAATCCTTCCATTTGGGTTTGA 3705 0.4227 MGQSSKKKKKKKNRGGGGGGKNKDHLSQSAANDSEQLLSEEITALCAIFQEDCKVLPASPAQILIKLRPYSKDMGYEDLDVSALLLVRCLPGYPFKCPKLQITPEDGLSESDADKLLSVLHDQANLNAREGRVMIFNLVEAAQEFLSGIEPIAKSTESKPLYSTKESNEELFLKDMASSNKIRSFVYGFIDLFSGYGESWNWGFGMDETAGKTSSLPPPKIDASKHGFEAREKKSDSKEKPLIMQELPAKLDTVGEVSEDSNNSISLANSSRSLGEDLVGSDNEGEKEDFIFAEDATEDNEDMYESVSSESLSSASLAHHQASQTVEKDLIMVHLLRLCASKGTLVESLPQVATELFNLGIVSDWARDMASRPPSIFNKTFDHAFQKHVASSRISQFWKPSSDLGGSNTVPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRIKDKTMPDRILREVATLSRLQHQHVVRYHQAWFETGVTDSYGDAAWGSMTPLSSTFSCKAASSNDAVGHENQLESTYLYIQMEYCPRTLRQKFESYSHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSNLKQKGELPPVWVARFPEQESLLRKLMSPGPSDRPSATELLHNAFPPRMESELLDDILRTMQKSEDTSIYDKVVNAIFDEEMLSTKHIHQAGRLGTIGDNSSSIQHTDFETEVRDYVVDVSREIFRLHCAKHLEILTMRLLEDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHGELLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGFADQALPRLRGALPSDKRTCKALDELSELFSLLRIWRIDKNVYIDALMPPTESYHRDLFFQVYLRKENNPGSLSEGALLAVGGRYDYLLHQLWSHDYRGSPPSGVGSSLALETIIQNCPVDFKPIRNEASTNILVCSRGGGGLLVERMELVAELWEENFKAEFVLTPDPSLTEQYEYANEHDIKCLVIITDAGVSQTGYVKVRHLELKREKNVERENLVKFLSDAMATQFRNPSIWV* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3033 1234 SUPERFAMILY UBC-like 35 146 IPR016135 -
Dod03g3033 1234 MobiDBLite consensus disorder prediction 224 241 - -
Dod03g3033 1234 SUPERFAMILY Class II aaRS ABD-related 1130 1224 - -
Dod03g3033 1234 Pfam Anticodon binding domain of tRNAs 1129 1226 IPR024435 -
Dod03g3033 1234 Gene3D Transferase(Phosphotransferase) domain 1 539 730 - -
Dod03g3033 1234 CDD STKc_EIF2AK4_GCN2_rpt2 413 720 - -
Dod03g3033 1234 Pfam Histidyl-tRNA synthetase 868 1111 IPR041715 -
Dod03g3033 1234 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Dod03g3033 1234 MobiDBLite consensus disorder prediction 211 241 - -
Dod03g3033 1234 PANTHER EIF-2-ALPHA KINASE GCN2 31 1233 - -
Dod03g3033 1234 Gene3D - 1125 1224 IPR036621 -
Dod03g3033 1234 ProSiteProfiles Protein kinase domain profile. 420 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g3033 1234 Coils Coil 971 991 - -
Dod03g3033 1234 MobiDBLite consensus disorder prediction 1 33 - -
Dod03g3033 1234 SMART RWD2001b 40 149 IPR006575 GO:0005515
Dod03g3033 1234 Gene3D Ubiquitin Conjugating Enzyme 27 155 IPR016135 -
Dod03g3033 1234 PANTHER HISTIDYL-TRNA SYNTHETASE 31 1233 - -
Dod03g3033 1234 MobiDBLite consensus disorder prediction 1 16 - -
Dod03g3033 1234 Gene3D Bira Bifunctional Protein; Domain 2 783 1117 IPR045864 -
Dod03g3033 1234 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Dod03g3033 1234 Pfam RWD domain 38 146 IPR006575 GO:0005515
Dod03g3033 1234 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Dod03g3033 1234 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g3033 1234 SUPERFAMILY Protein kinase-like (PK-like) 416 729 IPR011009 -
Dod03g3033 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Dod03g3033 1234 SUPERFAMILY Class II aaRS and biotin synthetases 787 1113 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3033 Dod-Chr3 63120918 63144368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3033 420 723 MAP Kinase Kinase Kinase AT1G63700 25.641 1.41e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Dod03g3033 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3033 K16196 - gmx:100797996 2073.13