Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3029 ATGTATCCAAAAGGGTCTGGCCAAGATGGTCCTGATTCGAGACCCGTGCGCTCAAGTAATAGGATCAGGACAAGGCCAAGTGTTTATGGCCGACCGTTATTGTATTACAACTCAAATCTTAGACGCAATAGGAAAAGCAAGAACAAGACAAGGACAGCAGCTTCACAGATTGCCAAGTTGTTAGGGAACAGGAAACCGCAAGCTTCAAAATCTAATTCTGACTCTATCAACCTTCGGCGTTCAACTAGAAAGAGAAGGCTTAATGTAAATCTTGCAGGCTACACAACAGACACCTCTGGAGCTGAGGATGAAGACTTAATGAGACCTAAATATCGACCATTGAGAAACCGGATTAACAATAGTATCAGCCAGGATGAGTTGATGTCTAAGCGCAAAAGAGCAATGCCCACTAAACCAACACCTAGACGTGAAGGTCTACGACCTCGTCGTTCCAAGGGTTCTGCAAGAGTACAAATGATTTCAGAATCAGATGATGAGCAAGACCTTTCAGAAGAGAAGGTCGAACAGGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGTTGATGATCAAAATGAGATTGAAGAGGATGCTGAGGGTGAAGATGAAGATGAGGATGGTGATGATGAAGAGGGTGAAGAAGAAGAGCAGGATGGAAGAAGGCGCTACGATCTTAGAAACCGTTCCGATGTTCGCAGGTTCTCTATGGAGGAAGGGAAGACCCGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAAACAAGGTCAACAGGGAGGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCCTCGCTTATCAAGGCCAGAGGACTCTGATGACTCCCTTCTTGTGGATGAGCTGGACCAAGGCCCTGCTATTCCGTGGGGTCGAAGTGGCAGCAGATCTGGTCCACCTTGGCTTTTTGGGGGCTTTGACACACATGGAACAACAGCTTGGGGACTAAATCTGGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTGACATCTGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGCTTTGAGGATATAGGTGGGCTCTCTGAATACATTGATGCTCTGAAGGAAATGGTCTTCTTTCCATTGTTGTATCCAGATTTCTTTGCTAGTTACCATATTACTCCTCCTAGGGGAGTGTTGTTATGTGGTCCCCCTGGAACTGGAAAAACACTAATTGCAAGAGCTTTGGCTTGTGCCGCTTCAAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAAGAAGCACAAAGGAATCAACCGTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGATCTAGTAAGCAAGAGCAAATTCACAATTCCATAGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCCACCAACAGAATTGATGCTATCGATGGAGCCTTGCGACGCCCTGGCAGATTTGATCGTGAATTTAATTTTCCTTTGCCTGGGTGTGAGGCACGTGCTGAAATATTGGACATTCATACTCGAAAGTGGAAGCATCCTCCTTCAAAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAGGCTCTATGCACTGAAGCTGCCATTCGTGCTTTCCGAGAAAAATATCCACAGGTTTATACGAGTGATGACAAATTTCTTATAGATGTTGATTCAGTCAAGGTAGAAAAGTATCATTTTATTGACGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCGTTGTCTCTTGTAGTTCAACCATGCCTTCAGAGACATCTAGAAAGGGCCATGAGTATCATATCTGATATTTTCCCCCCCGTTTCTGTTGCATCAGAATTGACCAAACTTTCAATGCTTTCCTATGGGTCTGCAATTCCGCTAGTTTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACCGGGCTGGATCATCTTGGGCCTGCAGTTTTACATGAACTGGAGAAATTTCCTGTACATTCGTTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGATACCAGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGGACTACACCATCAATTCTCTATTTACCGCAATTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTTTGCTAGAAGAATTGCCATCTGACTTGCCTATCCTACTACTCGGGACATCATCGGTTGCACTTGCTGAACTTGAGGGAGTACCACCTTCAGTTTTCCCTCCTCGCTCAATCTATGAAGTGAACATGCCATCTACTGAGGATAGGACTCTCTTTTTCAATCGTTTAATTGAAGCTGTTATGTCAGTCTTGTTGGAGGGAATGAGCAAGAAATCCCGGGATACAGGATCCCTTCCTGAACTTCCCAAGGCACCAAAGTTGGCTAGTGGTCCTAAGGTATCTGAGCTAAAAGCAAAGGTAGAAGCTGAGCAACATGCACTTCGCAGATTGCGAATGTGCCTTAGAGATGTTTGCAATCGGGTATTGTATGACAAACGATTTAATGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTCAATTATACAGAACCCTATGGACATGGCTACCGTGCTGCAGCATGTTGATAATGGCCATTATATTACATGCGCAGCATTCCTTCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGATCCAGGATTGTCAGTAGAGCTTGCGAGCTCCGTGATGCGGTGCACGGGATGCTCTCACAGATGGATCCAGCTCTGGCTGCATACTGTGAAAAGATTGCTAGCCAAGGTGGCCCAGCTCATTTGCCAGATGAATTGGGGTTTTCTACATTCCCTGCTACCCCTGTTGTACAGATGGGTGCTGCTACCAGAATGAGTGCTCGACTTCGTCATGTCCAGCCAGAGGTTAATGTGGACCAGAGTTATGAAGCATTGAAGCGGACAAAGAAGACAGCTGATGTTGCACATGCAGAAGACAAGTCACAACAAGAATCTTTACCACCAAAGTCTTCCCAGGAGCATCAGGCAAATGACATGGATGCTGAAAGGCTGGAACCTGTAACAATTGATGGAAATCTGCAAGGAGCTTCGACAAGTAGCCATGCTGATGGCGGCAGTCTTGAGGATGTCACAATGGTGGATGCTGAATTTTCAAGACAAGTGGAGTCTGTCAAGGAGCAATTTGTTAAGCGCAGCGAAAATTGCAACGTTCCACAGCTTGAAAGGCTTTACACGAGAATTATGAAGGGTGTGTTTGAAGCCAAAGGTAAAGGAAATGATGATGTTAAGACTTCGGTTTTGAGGTTTTTGATGAAATTTGTAGAGGATGTTGCAAATTTTAACTAA 3585 0.4483 MYPKGSGQDGPDSRPVRSSNRIRTRPSVYGRPLLYYNSNLRRNRKSKNKTRTAASQIAKLLGNRKPQASKSNSDSINLRRSTRKRRLNVNLAGYTTDTSGAEDEDLMRPKYRPLRNRINNSISQDELMSKRKRAMPTKPTPRREGLRPRRSKGSARVQMISESDDEQDLSEEKVEQDETENGNDVEENDAVDDQNEIEEDAEGEDEDEDGDDEEGEEEEQDGRRRYDLRNRSDVRRFSMEEGKTRPRSPRRVLHQGMGNKVNREVRKGGSRVHKRPRLSRPEDSDDSLLVDELDQGPAIPWGRSGSRSGPPWLFGGFDTHGTTAWGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPSKELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFIDAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLERAMSIISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKIPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVALAELEGVPPSVFPPRSIYEVNMPSTEDRTLFFNRLIEAVMSVLLEGMSKKSRDTGSLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRVLYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITCAAFLQDIDLIVSNAKAYNGDDYNGSRIVSRACELRDAVHGMLSQMDPALAAYCEKIASQGGPAHLPDELGFSTFPATPVVQMGAATRMSARLRHVQPEVNVDQSYEALKRTKKTADVAHAEDKSQQESLPPKSSQEHQANDMDAERLEPVTIDGNLQGASTSSHADGGSLEDVTMVDAEFSRQVESVKEQFVKRSENCNVPQLERLYTRIMKGVFEAKGKGNDDVKTSVLRFLMKFVEDVANFN* 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3029 1194 Pfam AAA+ lid domain 572 609 IPR041569 -
Dod03g3029 1194 Pfam Bromodomain 907 971 IPR001487 GO:0005515
Dod03g3029 1194 Pfam ATPase family associated with various cellular activities (AAA) 410 545 IPR003959 GO:0005524|GO:0016887
Dod03g3029 1194 CDD AAA 690 809 - -
Dod03g3029 1194 CDD Bromo_AAA 890 999 - -
Dod03g3029 1194 ProSiteProfiles Bromodomain profile. 913 975 IPR001487 GO:0005515
Dod03g3029 1194 MobiDBLite consensus disorder prediction 164 218 - -
Dod03g3029 1194 SUPERFAMILY Bromodomain 888 1001 IPR036427 GO:0005515
Dod03g3029 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 635 IPR027417 -
Dod03g3029 1194 PANTHER AAA DOMAIN-CONTAINING 1 1188 IPR045199 -
Dod03g3029 1194 Gene3D - 546 631 - -
Dod03g3029 1194 SMART bromo_6 890 997 IPR001487 GO:0005515
Dod03g3029 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 910 IPR027417 -
Dod03g3029 1194 MobiDBLite consensus disorder prediction 1 30 - -
Dod03g3029 1194 MobiDBLite consensus disorder prediction 1060 1090 - -
Dod03g3029 1194 PANTHER BNAC08G44480D PROTEIN 1 1188 - -
Dod03g3029 1194 SMART AAA_5 406 547 IPR003593 -
Dod03g3029 1194 MobiDBLite consensus disorder prediction 126 151 - -
Dod03g3029 1194 MobiDBLite consensus disorder prediction 219 248 - -
Dod03g3029 1194 MobiDBLite consensus disorder prediction 62 289 - -
Dod03g3029 1194 Gene3D - 368 638 IPR027417 -
Dod03g3029 1194 CDD AAA 406 545 - -
Dod03g3029 1194 ProSitePatterns AAA-protein family signature. 515 533 IPR003960 GO:0005524|GO:0016887
Dod03g3029 1194 Gene3D - 882 1011 IPR036427 GO:0005515
Dod03g3029 1194 MobiDBLite consensus disorder prediction 1060 1076 - -
Dod03g3029 1194 PRINTS Bromodomain signature 956 975 IPR001487 GO:0005515
Dod03g3029 1194 PRINTS Bromodomain signature 922 938 IPR001487 GO:0005515
Dod03g3029 1194 PRINTS Bromodomain signature 938 956 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3029 Dod-Chr3 63084717 63091951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3029 356 610 Calmodulin-binding Proteins AT3G56690 36.680 1.15e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3029 K22531 - gmx:100787765 1947.94