Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3024 ATGGGAAGCTGCATTTCAACGCATGGGAAAAACATTCCACGTAACAAAAGGTCCAAGGACCCTAAGCCATCAACCCCAAAGAGACACCACCACCACAACAATGATCATCATCACTTCGAGCCTTCAACACCTACAGCAAGAAGGTCTTCTGTTACCATTCGTTCCATAAACGTTGTAAGCAATCCTACACCAGGTAACATCTTCGACAGGTACCAGTTTGGTAAGGAACTTGGAAGGGGTGAGTTTGGGGTGACAAATAGGTGTGTGGACCTTAAAAGCGGAGAGGCATTTGCATGCAAGAAGATAGCGAAGTCCAAGCTGAGGACGGAGATTGATGTGCAAGATGTGAGGAGGGAGGTGCAGATCATGAGGCACTTGCCTAGCCACCCTAACATTGTGTCGTTCAGGGAGGCTTATGAGGATAGGGATGCTGTGTACCTTGTCATGGAGCTTTGTGAAGGTGGTGAGCTCTTTGATAGGATTGTTGCTAGAGGCCATTACACCGAGAGGGCTGCTGCTGATGTTACCAAGACCATACTTGAAGTTTGCAAGGTGTGCCATGAACAAGGGGTGATACACAGGGACTTAAAACCTGAAAACTTCTTATTTGCAGATGGAAGTGAGGGCAGCCAATTAAAGGCAATTGATTTTGGCCTTTCCACCTTTTATTCACCTGGCCAAAGATTTAATGAAATTGTTGGAAGCCCTTATTACATGGCTCCAGAGGTGCTAAGGCGTAATTATGGACAAGAAATTGATATCTGGAGCACAGGAGTAATCCTTTATATTTTACTTTGTGGGGTTCCACCCTTTTGGGCAGACACTGAGGAAGGAATTGCACAGGCAATCATCCGGGGTAACTTTGATTTCACAAGGGATCCTTGGCCTAAAGTTTCAGATGAAGCAAAACACCTTGTTAAGCGTATGCTTGATCCAAATCCACACACCCGGATAACAGTTCAAGAAGTCCTTGACCATACCTGGATACTACATAGGGAGCATGGTCGAAATGTTTCTCTTGGAGACCAAGTCAGAATGAGGATCAAGCAATTCTCCTTGCTGAACAGATTTAAGAAGAAGGTCCTTAGCGTGGTGGCTGATAACCTGCCTGATGAGCAAATTGATAGCATGAGGCAAATGTTCCATTTGATGGACAAGGACAAAAGTGGGTGCTTGTCATTTGAGGAGCTCAGAGATGGGCTTTCAATGATTGGACACGCTCTTCCTGATCGTGATGTCGAGATGTTGATGGATGCTGCTGATATTGATGGAAGCGGCACCCTGAATTGTGAAGAGTTTATCACAATGAGTGTTTATCTGAGAAAGATTGGAGATGATGAGAGTCTCACTGAAGCATTTAATTACTTTGACAAGAACCAGAGCGGATATGTTGAGTTTGATGAGTTGAAAGATGCCTTATCCAATGATGACTCAGAGGCCATTAACGACCAAGTGATCAGAGACATTCTAAATGACGTCGACCTAGACAAGGATGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGCAGATTGGAAGATGTCTTCTCGCCAGTATTCAAGAGCACTGCTAAGTGCATTGAGCTTCAGGATGTTTAAGGATAAATCTGGGACACTAACTAACTAA 1638 0.4444 MGSCISTHGKNIPRNKRSKDPKPSTPKRHHHHNNDHHHFEPSTPTARRSSVTIRSINVVSNPTPGNIFDRYQFGKELGRGEFGVTNRCVDLKSGEAFACKKIAKSKLRTEIDVQDVRREVQIMRHLPSHPNIVSFREAYEDRDAVYLVMELCEGGELFDRIVARGHYTERAAADVTKTILEVCKVCHEQGVIHRDLKPENFLFADGSEGSQLKAIDFGLSTFYSPGQRFNEIVGSPYYMAPEVLRRNYGQEIDIWSTGVILYILLCGVPPFWADTEEGIAQAIIRGNFDFTRDPWPKVSDEAKHLVKRMLDPNPHTRITVQEVLDHTWILHREHGRNVSLGDQVRMRIKQFSLLNRFKKKVLSVVADNLPDEQIDSMRQMFHLMDKDKSGCLSFEELRDGLSMIGHALPDRDVEMLMDAADIDGSGTLNCEEFITMSVYLRKIGDDESLTEAFNYFDKNQSGYVEFDELKDALSNDDSEAINDQVIRDILNDVDLDKDGRISFEEFKAMMKTGADWKMSSRQYSRALLSALSFRMFKDKSGTLTN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3024 545 Pfam EF-hand domain pair 389 437 IPR002048 GO:0005509
Dod03g3024 545 SMART efh_1 412 440 IPR002048 GO:0005509
Dod03g3024 545 SMART efh_1 485 513 IPR002048 GO:0005509
Dod03g3024 545 SMART efh_1 448 476 IPR002048 GO:0005509
Dod03g3024 545 SMART efh_1 376 404 IPR002048 GO:0005509
Dod03g3024 545 SUPERFAMILY Protein kinase-like (PK-like) 50 334 IPR011009 -
Dod03g3024 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 526 - -
Dod03g3024 545 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 49 526 - -
Dod03g3024 545 CDD STKc_CAMK 70 328 - -
Dod03g3024 545 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Dod03g3024 545 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Dod03g3024 545 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Dod03g3024 545 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g3024 545 MobiDBLite consensus disorder prediction 1 50 - -
Dod03g3024 545 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Dod03g3024 545 SUPERFAMILY EF-hand 368 510 IPR011992 -
Dod03g3024 545 Pfam EF-hand domain pair 447 511 IPR002048 GO:0005509
Dod03g3024 545 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Dod03g3024 545 MobiDBLite consensus disorder prediction 21 35 - -
Dod03g3024 545 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Dod03g3024 545 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Dod03g3024 545 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Dod03g3024 545 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Dod03g3024 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Dod03g3024 545 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g3024 545 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Dod03g3024 545 Gene3D - 338 513 - -
Dod03g3024 545 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Dod03g3024 545 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3024 Dod-Chr3 63056610 63060641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3024 1 541 EF-hand Containing Proteins AT2G31500 66.179 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dod03g3024 Pkinase 7.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3024 K13412 - gmx:100818929 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3024 03 63056610 63060641 Dod03g3024 03 63056610 63060641 ECH