Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3023 ATGGAGTCCGAGGATGATATGCACGACGCAAACGACGTCGAATCGCTCGACGACGATTTCTACAGCGGCGAGACCGAGGACGCTCCCATGGATTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGACGCTGATGATTCCGACAGGCTCCACTCTCGCCGCCCCGAGCAAAATTTCACCATCTTGAATGAATCGGATATTAAGCAAAGGCAGGAGGAGGACATAGCTAGAGTAGCAACGGTTCTTTCCATATCAAGAGTTTCTGCAAGCATACTACTTCGCCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCTTGGTTTGCAGATGAAGATCGAGTCCGTAGAGCAGTTGGCTTGTTGGAGAAGCCAGTTGTTCAGCATCATAATGATAGAGAGCTTACTTGCGGCATCTGTTTTGAAAATTATCCTCGTGCTGGGATTCAAATGGCTTCTTGTGGTCATCCCTTCTGTATCTCATGCTGGGGAGGATATATCGGCACGTCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGATCCCTCTTGTGGAGCTGCTGTTGATCAAGATATGATTAATCTATTAGCATCTGAAGAAGATAAACAAAAGTATGGCCGTTACCTTCTTAGGTCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGCGAATATGCGGTTACTTTTGATGCTGGTAGTGGAAATTATGACGTTTCATGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCCCACCGTCCAGTGAACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCGAAATGCAAACGACCGATTGAAAAAAATCAAGGGTGCATGCACATGACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGATATGAAGCAGCTAAGCAGGAGGGAGTGTATGATGATGCTGAAAGAAGAAGAGAGATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTTCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATCCAATGCCAACCTGAGTCACAACTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGTAGACGAGTGCTGAAATGGACGTATGCATATGGGTTCTATTTACCAGAGCATGAGCATGCAAAAAAGCAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAGGAGCTACAGCCATTCCTCAGTGATGGCCCATCTAAGGAATTCAATGACTTCCGTACCAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTTAGGGCATTAGAGAATGGTCTAGCTGATGTGGATAGCAATGGAGCAGCATCCAGCAAAGCAGTGAGCTCAAAAAGTGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTTTACGAAACAGCATGTCAAGCAGAATGTCTGATGATAATATTCATTGGAGCTGCGAGCAATGTACATTCGCAAATGTCAAATCTGCCACCTTGTGCCAGATGTGCAATCGACCACGGCGTTGA 1773 0.4529 MESEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDADDYFDDADDSDRLHSRRPEQNFTILNESDIKQRQEEDIARVATVLSISRVSASILLRHYNWSVSKVHDAWFADEDRVRRAVGLLEKPVVQHHNDRELTCGICFENYPRAGIQMASCGHPFCISCWGGYIGTSINDGPGCLMLRCPDPSCGAAVDQDMINLLASEEDKQKYGRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVNCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDAERRREMAKNSLERYTHYYERWASNQSSRQKALSDLHQMQTVHIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSDGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKAVSSKSAAGSSKGRGGRGKGTLRNSMSSRMSDDNIHWSCEQCTFANVKSATLCQMCNRPRR* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3023 590 Pfam Ariadne domain 357 518 IPR045840 -
Dod03g3023 590 SUPERFAMILY RING/U-box 133 220 - -
Dod03g3023 590 SUPERFAMILY RING/U-box 209 277 - -
Dod03g3023 590 ProSiteProfiles Zinc finger RanBP2 type profile. 561 590 IPR001876 -
Dod03g3023 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Dod03g3023 590 Gene3D - 266 520 - -
Dod03g3023 590 MobiDBLite consensus disorder prediction 522 558 - -
Dod03g3023 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Dod03g3023 590 SUPERFAMILY Ran binding protein zinc finger-like 561 589 IPR036443 -
Dod03g3023 590 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Dod03g3023 590 Gene3D - 560 590 - -
Dod03g3023 590 SUPERFAMILY RING/U-box 289 337 - -
Dod03g3023 590 MobiDBLite consensus disorder prediction 522 539 - -
Dod03g3023 590 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Dod03g3023 590 MobiDBLite consensus disorder prediction 1 46 - -
Dod03g3023 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Dod03g3023 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Dod03g3023 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 222 IPR013083 -
Dod03g3023 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Dod03g3023 590 SMART ibrneu5 274 344 IPR002867 -
Dod03g3023 590 SMART ibrneu5 208 270 IPR002867 -
Dod03g3023 590 SMART zf_4 564 588 IPR001876 -
Dod03g3023 590 MobiDBLite consensus disorder prediction 1 59 - -
Dod03g3023 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3023 Dod-Chr3 63048908 63055590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3023 17 589 ARIADNE family AT1G65430 71.306 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3023 K11968 - gmx:100810427 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1807 10 39572043 39577708 Dod03g3023 03 63048908 63055590 PCT