Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3010 ATGGAGTCAGATCTTCATCAGCACCCTCCCATGTTTTTGGACCATCACCACCACCACCACCATCAGCAGCATCATCACCACCAACACCAACAGCAGCAGATGAATTTGGGGCTAACGAGGTTCCGATCGGCACCAAGTTCCTATTTTTCAAGCATCATTGACAAGGAGTTCTACGACACCATCTTCAACAACAAGCCGTCAAGCCCAGAAACTGAGCGAATCTTCGCAAGGTTCATGAATAGCCTTAGCAGCGAAGATGGTGTTGCAGCAGCTTCTTCGGAGGTAGATTCACTTGATAAGAATCTTGCACCTGTTCAGCAAAACCCTGTGGTGAAGGAAGAGGTTAATAATAATAACCTTCAGCAGCCTCAGGCTTTGCCTTCAATGAATAATAATGAAACCGTGCTTCTTCAACAACAGCAACAGCAGCAGAGGAATATAAGTAATTATGGATCTTCAGGGGCTCCTCAGAGTTTTTACCAAAGTTCAGGACGACCACCTTTGCCAAATCAGACGAAGACTGGCCGTGGAAATGCTTCTAATCTTATCAGGCATGATAGCTCTCCTGCAGGACTTTTTTCGAGCATACACATTGAGAGTGGGTATGCTGCTATAAGAGGCATGGGAACTATGGGAGCTGGTAATAACACTAGCGAGGATGCAAATTTTTCTGGTGCAGCCAGGTTGAAGAATGCAGCCACCTACTCCTCAGGGCTAATGTCCCCAATAGCTGAAATTGGGAACACAACAAATAGAGTTAACAATCCAGACAATGAAGCTTTTGTAGAAAGCCAGCAGGGCAATGATTTTATCCCAGGTTTACCCGTAGGTTCTTGGGATGACTCTTCTTCAATAATGTCCGACAACATTACTGGCCTAAAAAGATATAGAGAAGAGGATGTAAAGCCATTTTCTGGCTTAAGTGCAGGTGAAACTCAGAATGAAAAAGGAGGCCAGCCCCATGCACCTTTGGATCACCAGTTGAGTCTGCCAAATACATCAGCAGAAATAGCAGCCATTGAGAAGTTTTTAAATTCAGATTCTGTGGTGTGCAAACTTCGTGCCAAGCGTGGGTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTGGTCCCGAACATGGACAAGCAAACAAACACTGCAGACATGTTGGACTTGGCTGTTGAGTACATCAAAAACCTTCAAAAGCAAGTTGAGACTCTTTCGGACTGTCACGCGAAGTGTACGTGCTTACACAAGCAGCAGCAATAA 1296 0.4498 MESDLHQHPPMFLDHHHHHHHQQHHHHQHQQQQMNLGLTRFRSAPSSYFSSIIDKEFYDTIFNNKPSSPETERIFARFMNSLSSEDGVAAASSEVDSLDKNLAPVQQNPVVKEEVNNNNLQQPQALPSMNNNETVLLQQQQQQQRNISNYGSSGAPQSFYQSSGRPPLPNQTKTGRGNASNLIRHDSSPAGLFSSIHIESGYAAIRGMGTMGAGNNTSEDANFSGAARLKNAATYSSGLMSPIAEIGNTTNRVNNPDNEAFVESQQGNDFIPGLPVGSWDDSSSIMSDNITGLKRYREEDVKPFSGLSAGETQNEKGGQPHAPLDHQLSLPNTSAEIAAIEKFLNSDSVVCKLRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKNLQKQVETLSDCHAKCTCLHKQQQ* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3010 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 424 IPR036638 GO:0046983
Dod03g3010 431 SMART finulus 365 415 IPR011598 GO:0046983
Dod03g3010 431 MobiDBLite consensus disorder prediction 12 28 - -
Dod03g3010 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Dod03g3010 431 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 24 428 - -
Dod03g3010 431 Gene3D - 360 431 IPR036638 GO:0046983
Dod03g3010 431 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 428 - -
Dod03g3010 431 MobiDBLite consensus disorder prediction 137 186 - -
Dod03g3010 431 MobiDBLite consensus disorder prediction 305 324 - -
Dod03g3010 431 MobiDBLite consensus disorder prediction 1 33 - -
Dod03g3010 431 Pfam Helix-loop-helix DNA-binding domain 364 410 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3010 Dod-Chr3 62433953 62438505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3010 13 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.474 7.09e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g3010 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3010 - - gmx:100803833 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3010 03 62433953 62438505 Dod03g3010 03 62433953 62438505 ECH
Dod10g1787 10 39051701 39055429 Dod03g3010 03 62433953 62438505 ECH
Dod01g2291 01 60849117 60851546 Dod03g3010 03 62433953 62438505 ECH
Dod07g1212 07 31716027 31718584 Dod03g3010 03 62433953 62438505 ECH