Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3005 ATGAACTCATCAAACAACTGGCTTTCCTTCCCCCCTTCTCCTACTCATTCTTCATTACCAGCTCATGATGATCTCCAATTAACACAGTATCATCAATTTCCTCTTGGGTTTGTGAACGAGAACACGGAAAACCCTTTCCAAAATCATGAATGGAATCTGATTAATAGCCAAAGCAGCGATGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTTAGCAAGTCTGAGAATCAGTCATCAGATCTTGCTGCTCTCAATGAAATTCATCATCATCCAACTGCAGATTCAGAATACCTGTTCACTAATAACAGTCTCATTCCAATACAAAACACATCGGTGGCTACATCAAGCAACTCTGAGTGTCAAAAGAATAATGCTAATAGTAACTTGCAATCATTGACATTATCCATGGGAAGTGGTAATAATAACGATTCAACATGTGAAACCAGCTGTGACAACAGTACGAATACCACTACTGTTGAAGCCCCACCAAGAAGAACTTTGGATACCTTTGGCCAGAGAACATCAATATATCGTGGTGTAACAAGACATAGATGGACTGGAAGATATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGGTGGATATGACAAGGAAGATAAAGCAGCTAGGGCTTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAATTTTCCAATAAGCAACTATGAGAAGGAATTGGATGAAATGCAGCACATGACAAGACAAGAATTTGTGGCTGCCATAAGAAGGAAAAGCAGTGGATTCTCGAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAGCATGGGAGATGGCAAGCTAGGATTGGCAGGGTGGCTGGAAACAAAGATCTTTACTTGGGAACTTTTAGTACCGAGGAAGAGGCTGCAGAAGCTTATGACATAGCTGCGATAAAGTTCCGCGGTCTCAACGCTGTCACAAACTTTGACATGAGTCGTTACGATGTGAAGGCCATTCTCGAGAGCAGCACTCTCCCAATAGGAGGAGGTGCTGCCAAACGGCTAAAAGAAGCTCAAGCACTGGAATCTTCTAGAAAACGGGAAGAGTTGATTGCACTTGGCTCGTCAAGCTTTCAATACGGAACAACCTCACCATCAAGCTCTTCTTCTAGCAGGCTACAACAACAACCTTACCATAGTCTCATGCAGCACCAGTTCGAACAACCTCATCAACCTCAACCTTTGCTAACCCTACAAAACCATGATAGCATTTCTCATCAGTTAACTCATCAAGAGACTTCATCGCTTCATCAGAGTTATCTCCAAAAGCAGCTTCAGTTGCACCAACAGAATGCTCAGTTTTACAATAGTTACCTTCAGAACCACCCGGCTTTGATTCAAGGAATGATGAACAACATGGGTTCTTCTTCATCTTCATCGTCTATCTTGGATAATAATAATAATAGTAACAATCATGGTGTTGGAGGGTTTATGGGGAGCATGCTTGGTATGGCTTCAAATTCCTCAGCGGAGGAACTTGGGTTGGTTAAGGTTGATTACGACGGTTATGGCAGTTATGGAGGTTGGTCTGCGGCGACGGCTGCGGCGGAGTCCATGCAGGCACCAACTGGTGGTGCATTTACAATGTGGAACGAATAA 1668 0.4347 MNSSNNWLSFPPSPTHSSLPAHDDLQLTQYHQFPLGFVNENTENPFQNHEWNLINSQSSDEVPKVADFLGVSKSENQSSDLAALNEIHHHPTADSEYLFTNNSLIPIQNTSVATSSNSECQKNNANSNLQSLTLSMGSGNNNDSTCETSCDNSTNTTTVEAPPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMQHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESSTLPIGGGAAKRLKEAQALESSRKREELIALGSSSFQYGTTSPSSSSSSRLQQQPYHSLMQHQFEQPHQPQPLLTLQNHDSISHQLTHQETSSLHQSYLQKQLQLHQQNAQFYNSYLQNHPALIQGMMNNMGSSSSSSSILDNNNNSNNHGVGGFMGSMLGMASNSSAEELGLVKVDYDGYGSYGGWSAATAAAESMQAPTGGAFTMWNE* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3005 555 CDD AP2 175 241 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 6 554 - -
Dod03g3005 555 SUPERFAMILY DNA-binding domain 274 335 IPR016177 GO:0003677
Dod03g3005 555 PRINTS Ethylene responsive element binding protein signature 315 335 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 SUPERFAMILY DNA-binding domain 175 241 IPR016177 GO:0003677
Dod03g3005 555 SMART rav1_2 176 245 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 SMART rav1_2 275 339 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 ProSiteProfiles AP2/ERF domain profile. 275 333 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 ProSiteProfiles AP2/ERF domain profile. 176 239 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 MobiDBLite consensus disorder prediction 381 400 - -
Dod03g3005 555 Pfam AP2 domain 176 231 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 Pfam AP2 domain 276 325 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 Gene3D AP2/ERF domain 275 335 IPR036955 GO:0003700|GO:0006355
Dod03g3005 555 Gene3D AP2/ERF domain 176 241 IPR036955 GO:0003700|GO:0006355
Dod03g3005 555 CDD AP2 274 335 IPR001471 GO:0003700|GO:0006355
Dod03g3005 555 MobiDBLite consensus disorder prediction 1 21 - -
Dod03g3005 555 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3005 Dod-Chr3 62332323 62335235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3005 4 555 AP2-EREBP Transcription Factor Family AT1G51190 61.083 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod03g3005 AP2 1.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3005 K09285 - gmx:100788471 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3005 03 62332323 62335235 Dod03g3005 03 62332323 62335235 ECH