Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3000 ATGGAAGTGGACAAGAAGGAGAAAGAGCTAAGCATATCATCTAGCTCTTTGGATGAAGAAGATACTGTGAAGGTGGCTTTACACTTAGGGCTTCCAAGCACAAGTTCAGCTGATTTAGGTTCAAGCCTTTGTTCCACAGAGTTTTCAGACAAAGAAGAGAAAGTCACTGTTGCTTCTGGGGATCTGTCAAATGGAATTAACAGAGGACAGTATTGGATCCCAACCCCTACTCAGATCCTGATTGGTCCAACACAGTTCGCATGCCCCCTTTGTTGCAAGACATTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAATCTCTAAGGGGAACGCAACCAACAGCAATGCTTAGACTCCCTTGTTACTGCTGTGCACCCGGGTGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCATTATAAGAGGAAGCATGGACTCAAGCCTTTCACGTGTAGGAAATGCTCCAAAGCATTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAGCGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCATAAAAGATCCCTTAAGGATCACATCAAGGCATTTGGAAATGGACATGCAGCTTATGGAATTGACTCATGTCTTGAACAAGATGATGGAGCAGGCTCTGAAGTTGAAGAGAACGAATCATTACAGTCATAG 747 0.4418 MEVDKKEKELSISSSSLDEEDTVKVALHLGLPSTSSADLGSSLCSTEFSDKEEKVTVASGDLSNGINRGQYWIPTPTQILIGPTQFACPLCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCSKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGNGHAAYGIDSCLEQDDGAGSEVEENESLQS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3000 248 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 245 - -
Dod03g3000 248 Gene3D Classic Zinc Finger 148 223 - -
Dod03g3000 248 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Dod03g3000 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Dod03g3000 248 SUPERFAMILY beta-beta-alpha zinc fingers 77 108 IPR036236 -
Dod03g3000 248 PANTHER ZINC FINGER PROTEIN WIP2 1 245 IPR043584 GO:0003700|GO:0010468
Dod03g3000 248 SUPERFAMILY beta-beta-alpha zinc fingers 152 190 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3000 Dod-Chr3 62309558 62312117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3000 23 248 C2H2 Transcription Factor Family AT3G57670 67.557 1.49e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g3000 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3000 - - gmx:100801922 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3000 03 62309558 62312117 Dod03g3000 03 62309558 62312117 ECH
Dod10g1780 10 38930193 38933026 Dod03g3000 03 62309558 62312117 ECH
Dod01g2277 01 60642953 60645969 Dod03g3000 03 62309558 62312117 ECH
Dod07g1202 07 31363013 31365589 Dod03g3000 03 62309558 62312117 ECH
Dod10g1780 10 38930193 38933026 Dod03g3000 03 62309558 62312117 PCT