Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2998 ATGAATTGGAATCCACACATGGAGGTCCACTACAATAACATCAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATTTTGAGGGTCTCACTTATGAACATGTCAATTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCATACCCATCAACTTCAAGCTTTTACAAGTTTGGACTTTCTGAACCTGACAGCACTCAATACTATCGTTACAGTCATGGTTATGAGGTAAATCATCATGAACCATTGGTTGATGAGTATAGGAGGCCTCCAGAAAACTCAACGACAGTCAATGAACATGCAGCAGCAGTAAGCACAGAATGGGGAGAAGGTGTAAACACTGCTACTCGAGACAATTCTATTGAATGTCCACGAAGACATCATAGTAATTCCAGCGATTATCAGGTCATTTGGCAAGACAGTATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACCCAAAGCCGCGGTCTTACCCCCGAACAGATCTCCTCACTTCCAGTTTCAACGTACAAGTGTGGGTTCTTCTTGAGGAAGAAGTCAAGGGATGAGAGATGTGTGATTTGCCAGATGGAGTATAAAAGAGGGGAGAAGCGGATCACTTTGCCTTGTAAACATGTCTATCATGCTAGTTGTGGGAAGAGATGGCTTAGCATCAATAAGGCTTGCCCTATATGTTATACGGAGGTGTTTGCCGACAAGTCAAAACACAAACAACCACGGACAACCTAA 762 0.4252 MNWNPHMEVHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSTSSFYKFGLSEPDSTQYYRYSHGYEVNHHEPLVDEYRRPPENSTTVNEHAAAVSTEWGEGVNTATRDNSIECPRRHHSNSSDYQVIWQDSIDPDNMTYEELLELGEAVGTQSRGLTPEQISSLPVSTYKCGFFLRKKSRDERCVICQMEYKRGEKRITLPCKHVYHASCGKRWLSINKACPICYTEVFADKSKHKQPRTT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2998 253 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dod03g2998 253 SUPERFAMILY RING/U-box 192 244 - -
Dod03g2998 253 Pfam Ring finger domain 195 236 IPR001841 -
Dod03g2998 253 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Dod03g2998 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Dod03g2998 253 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Dod03g2998 253 SMART ring_2 196 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2998 Dod-Chr3 62281386 62285756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2998 5 247 C3H Transcription Factor Family AT3G63530 41.365 7.27e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2998 K19045 - gmx:100805963 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2998 03 62281386 62285756 Dod03g2998 03 62281386 62285756 ECH
Dod10g1775 10 38898873 38902697 Dod03g2998 03 62281386 62285756 PCT