Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2994 ATGGCAGCGGCAGCAACGACGCTGGAGGAAGTGCGAACCCTGTGGATAGGGGACCTACAGTACTGGGTAGACGAGTCGTACCTGACCCACTGCTTCGCCCACACAGGCGACGTCGTTTCGATCAAAATCATCCGCAACAAGATCACCGGCCACCCGGAGGGCTACGGCTTCGTCGAGTTCGTCTCCCACGCGGCCGCTGAGCGCGTGCTCCACACCTACAACGGCACCCCTATGCCCGGCACCGAACAGAACTTCAGGCTCAATTGGGCCTCCTTCGGTGTCGGCGAGCGCAGGCCCGATTCCGGGCCCGACCACTCCATCTTCGTTGGCGACCTCGCCCCTGACGTCACCGACTACCTCCTCCAGGAGACTTTCCGCAACGTCTACCCTTCCGTCAGAGGCGCCAAAGTCGTTACGGACCCCAGCACCGGCCGATCCAAGGGCTACGGCTTCGTCAAATTCTCAGATGAGAACGAGAGGAACCGGGCCATGACTGAGATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGTATTAGCGCTGCTACCCCTAAGAAGACCACCGCTTTTCAACAGCAGTATGCTCCACCTAAAGCAATGTATCCAATTCCGGCGTACACTACTCCAGTGAGTGCAGTTCCGCCAGAATACGATATGAATAATACTACGGTTTATGTTGGTAATTTGGATCTTAATGTCGCAGAGGAGGAGCTGAAGCAAAGCTTTATGCAATTTGGGGATATTGTGTCTGTCAAAGTTCATGCTGGAAAAGGATTTGGTTTTGTTCAATATGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGGAAGATGATAGGCCAACAAGTGGTTCAACTTTCTTGGGCTAGTACTGCTAGACAGGACTTACCTGGTAGCTGGGGGCCACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTACGGACAGGGTTATGAAGCGTATGCTTATGGAGCTACTCATGATCCCTCCTTGTATGCGTATGGTGCATATGCTGGTTATGCACAGTACCCCCAACAGGTTGAAGGCGCTCAAGATGCGTCAGCTCCTTCGGAAGAGTTATATGACCCCTTGGCTATGCCTGACGTTGATAAGTTAAATGCTGCATATCTCTCAGTACACGGAAGTGCTATTGTAGGACGGTCTCTTTGGCAGAAAACCTCGCCATTCTTACAGCAAGCTTAG 1215 0.53 MAAAATTLEEVRTLWIGDLQYWVDESYLTHCFAHTGDVVSIKIIRNKITGHPEGYGFVEFVSHAAAERVLHTYNGTPMPGTEQNFRLNWASFGVGERRPDSGPDHSIFVGDLAPDVTDYLLQETFRNVYPSVRGAKVVTDPSTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTAFQQQYAPPKAMYPIPAYTTPVSAVPPEYDMNNTTVYVGNLDLNVAEEELKQSFMQFGDIVSVKVHAGKGFGFVQYGARASAEEAIQKMQGKMIGQQVVQLSWASTARQDLPGSWGPQMDPNQWSAYYGYGQGYEAYAYGATHDPSLYAYGAYAGYAQYPQQVEGAQDASAPSEELYDPLAMPDVDKLNAAYLSVHGSAIVGRSLWQKTSPFLQQA* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2994 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 294 IPR000504 GO:0003723
Dod03g2994 404 SUPERFAMILY RNA-binding domain, RBD 103 292 IPR035979 GO:0003676
Dod03g2994 404 Gene3D - 11 91 IPR012677 -
Dod03g2994 404 CDD RRM2_SECp43_like 104 183 - -
Dod03g2994 404 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 4 350 - -
Dod03g2994 404 SMART rrm1_1 223 290 IPR000504 GO:0003723
Dod03g2994 404 SMART rrm1_1 106 180 IPR000504 GO:0003723
Dod03g2994 404 SMART rrm1_1 13 88 IPR000504 GO:0003723
Dod03g2994 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 92 IPR000504 GO:0003723
Dod03g2994 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Dod03g2994 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 172 IPR000504 GO:0003723
Dod03g2994 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 287 IPR000504 GO:0003723
Dod03g2994 404 CDD RRM1_SECp43_like 13 93 - -
Dod03g2994 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Dod03g2994 404 Gene3D - 104 181 IPR012677 -
Dod03g2994 404 SUPERFAMILY RNA-binding domain, RBD 9 80 IPR035979 GO:0003676
Dod03g2994 404 Gene3D - 210 298 IPR012677 -
Dod03g2994 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2994 Dod-Chr3 62238887 62243707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2994 13 292 Eukaryotic Initiation Factors Gene Family AT1G22760 27.719 1.39e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2994 - - cam:101496574 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2994 03 62238887 62243707 Dod03g2994 03 62238887 62243707 ECH