Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2952 ATGAACTTCGACAATACGCAGCCCGGAACGGCGTCGTATTGGTGCTACAGCTGCACCCGTTTCGTCCACGTCAGCAGCAACAACAACATCGCCTGCCCTCACTGCGAAAGCGGTTTCGTCGAACAGGTCCGACCCGACCCATCACCCGACCACGCTTTCACCCCCTTCGCCGCTGCCGATGACCTCTCCGATCTCCGCCGTCAAGGTTTCCGTCGTCGCCGCCGCAGCGCTGGTGGAAACCGCTCCCCTTTCAACCCTGTGATCGTGCTCCGCGACGGAACTGGCGGCGATCGCGATGGAATCAACGCCGCCTTCGAACTCTACTACGACGACGGCGATGGCTCCGGCCTCCGTCCTCTGCCTCCGACGATAGCTGAATTTCTCTTAGGTTCTGGATTCGACCGGCTTCTGGAGCAGTTCTCGCAGATTGAGACAAACGCGTTCGGGCGGCCGGAGAATCCGCCGGCGTCGAAGGCGGCGATCGAGGCGATGCCAGCGTTGGAGATCGAGGAGGCGCACGTTGTCGCCGAAGCGCACTGCGCCGTGTGCAAGGAGCCCTTCGAGCTACGCGCGGAGGCGCGTGAGCTTCCGTGCAAGCACATCTACCACTCCGATTGCATCGTCCCGTGGCTTTCGATTCGGAACTCGTGCCCTGTGTGCCGCCACGAGCTTCCTTCGGATCAGAATCTCTCGATTCCAGGTTCAATCGACGAAGAATCGATCGGATTAACGATTTGGAGGCTTCCGGGAGGTGGATTCGCTGTCGGGAGATTTTCCGGCGGCCGTACAGCTGGCGATAGCCACCTGCCCGTGGTGTACACCGAGATGGACGGCGGACTGAACCCTAATGGAGCTCCGAGAAGATTCTCCCGTGCTGCAAGGAGCAATAGGGTTAGGGAAAATCGCGGAATCGGTAGGGTTTTTCGAAGCTTCGTATCCTTTTTTGGAAGAATCGGTTCTAGGTCTGGTTCTTCTTCTGCGCGTTCTGGTTCAGAGCATGTGAGTAGAAGAAGTAGCCATAGCCAATTGAGTTCGATGTTCAGTAGGAACTCGCGGAGGAGGACTTGGGTATTGGAAGATTGA 1083 0.5826 MNFDNTQPGTASYWCYSCTRFVHVSSNNNIACPHCESGFVEQVRPDPSPDHAFTPFAAADDLSDLRRQGFRRRRRSAGGNRSPFNPVIVLRDGTGGDRDGINAAFELYYDDGDGSGLRPLPPTIAEFLLGSGFDRLLEQFSQIETNAFGRPENPPASKAAIEAMPALEIEEAHVVAEAHCAVCKEPFELRAEARELPCKHIYHSDCIVPWLSIRNSCPVCRHELPSDQNLSIPGSIDEESIGLTIWRLPGGGFAVGRFSGGRTAGDSHLPVVYTEMDGGLNPNGAPRRFSRAARSNRVRENRGIGRVFRSFVSFFGRIGSRSGSSSARSGSEHVSRRSSHSQLSSMFSRNSRRRTWVLED* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2952 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 227 IPR013083 -
Dod03g2952 360 Pfam Protein of unknown function (DUF1117) 241 352 IPR010543 -
Dod03g2952 360 SMART ring_2 180 220 IPR001841 -
Dod03g2952 360 MobiDBLite consensus disorder prediction 319 346 - -
Dod03g2952 360 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Dod03g2952 360 SUPERFAMILY RING/U-box 160 227 - -
Dod03g2952 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 305 - -
Dod03g2952 360 Pfam Ring finger domain 179 221 IPR001841 -
Dod03g2952 360 CDD RING-H2_RNF126_like 180 221 - -
Dod03g2952 360 Pfam zinc-ribbon 12 42 IPR039525 GO:0061630
Dod03g2952 360 MobiDBLite consensus disorder prediction 72 91 - -
Dod03g2952 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 8 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2952 Dod-Chr3 61793233 61795595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2952 119 229 C3H Transcription Factor Family AT5G01980 46.847 5.91e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2952 - - gmx:100804867 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2952 03 61793233 61795595 Dod03g2952 03 61793233 61795595 ECH
Dod10g1747 10 38600035 38602787 Dod03g2952 03 61793233 61795595 ECH
Dod10g1747 10 38600035 38602787 Dod03g2952 03 61793233 61795595 PCT