Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2944 ATGGATCCAAACTATCCTCATACCAGCAGTGATTTCTTCACCAACAGCTTCCAAATTGGTGAAGATGGGACCATACTATTCTCTGATCAAAATCAATGCTATGATGTCAACCAACAATATGGGAACCTCCTTTATGAAACTGTTGCAGACCCCCTTGTTGATGAATTTCCTCTGAACACAAGCTCTGCTGAAGAAGCTGCTCCTCCTGCAGCCACAGTGGTGGATCCTTCCCTTGAAGACACTGAGTTCTCAGAAACAGCCAAGTTCATAACCCAAATCCTCATGGAAGAGAATGTTGAGCAAAGGCCATTCTATGACCCTTATAGCTTGCAGGTCACTGAGAAATCATTCTATGAGGCTCTCAGAGAAAACATGCCCCTCTCTCCTAATCAACACCCTCTTGATGTTCATCAAGGCTCTCACAGCCCCACTGGTGGAACAACCAGCAGCAGCAATAGCAGCAACAGCAATAACACTGCAGATGACAATCCCAGTGAGTTTGTGAAGCCCCCTAATAATTCTTCTGATGATCATGTTTTTCAGTTTACATCCCATGCCATTTCACAACATCCGTCAAATGCTTCCTATAATACCAATAATGGACTGTTAGATTTGGATTCTTCTATTACCAAGCTCTTGGCTCAGAATATTTTCAGTGACTCAGATTCTGTCTCCCAGTTTAGGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCCTCCGGGGCCTCAGCTTGTGACTGGTCTAGAAACCACACCTGTCAGCACCACCACCAATGTGTCTCTAGAGTCAAAGGGAGAAAAACGCGTTGGTGTTGGGTTAAAGAGCAGAAAGCATCGTGAGCTTGAAGAAGGAAGTGATGACACCGAAGAAGGGAGGAGTAACAAGCAATCTGCAATTGGTGGTATTTTTGATGAGAGTGAATTATCTGACATGTTTGATAAAGTACTGCTCAGTGTGGAGAAATTGCCAATGTGTAGTCATGGAGCGCATAATGAAGCCGAGAAAGCCTCTAAGCCTTCAACATTTGATGGAGGGAAAGGTCGTCCTAAGAGACAAGGGAAGAAGAAGGAAACCATAGATTTGAGGACCGTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCCAATGACAGCAGGACTGCCAATGAGCTTCTCAAGCAGATTAGGCAGCATTCTTCTCCCCTTGGGGATGCTATGCAAAGGCTGGCTCATTACTTCGCCAATGGCCTTGAGGCACGCCTACTTGGCAATGGTGCCGGAGCACAGTTCTATACCTCCCCCATCACCAAGAGGATAACTGCTGCTGATTACTTAAAATCCTACAAGGTGTTTTTGTCTGCCTGCCCTTTTAAGAAGTTTACACATTTCTTTGCAAACAAAATGATTATGAAAGCAGCCCAAAAGGCAGAAACACTTCACATCATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCAATACTAATTAAATTCCTATCAGAAAGAGATAATGGACCCCCCAAGCTGAGGATCACAGGGATAGAGTTTCCGCAACCAGGCTTCCGCCCTGCAGAAAGAATTGAGGAGACTGGTCACCGCCTTGCTAGCTATTGTAGGCGCTTCAATGTTCCCTTTGAGTACCATGCCATTGCATCAAGGAACTGGGAAACCATTCAGGTTGAAGACCTCAAAATTGAGAGCAATGAGTTTCTTGCTGTGAATTGTCTGATGAGGTTTAAGAATTTGATGGATGAGACAATTGAAGTGAACAGTCCTAGAGATTCAGTTCTGCATTTGATCAGGAAGATAAATCCAGATATTTTTGTTCAGTCCATTGTTAATGGATCTTACAATGCACCTTTCTTTGCCACAAGGTTCAGGGAGGCACTGTTCCATTTTTCTGCAATTTATGACATGTGTGACACTGTCATACCCCGTGAAAATGAGAAGAGGATGATGATTGAGAGGGAGATTGTGGGCCGGGATGCTATGAATGTTGTGGCCTGCGAAGGCTTTGAGAGGATTGAGAGGCCTGAGACATACAAGCAATGGCAGGCTAGGAACACAAGGGCTGGATTCAAGCAGCTCCCATTGAATGAGGAATTAATGACCAAATTTAGGGCCAAGTTAAGGGAATGGTACCACAGAGATTTTGTCTTTGATGAAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCATCCACTTGCTGGGTGCCTGCATGA 2214 0.4463 MDPNYPHTSSDFFTNSFQIGEDGTILFSDQNQCYDVNQQYGNLLYETVADPLVDEFPLNTSSAEEAAPPAATVVDPSLEDTEFSETAKFITQILMEENVEQRPFYDPYSLQVTEKSFYEALRENMPLSPNQHPLDVHQGSHSPTGGTTSSSNSSNSNNTADDNPSEFVKPPNNSSDDHVFQFTSHAISQHPSNASYNTNNGLLDLDSSITKLLAQNIFSDSDSVSQFRRGLEEASKFLPPGPQLVTGLETTPVSTTTNVSLESKGEKRVGVGLKSRKHRELEEGSDDTEEGRSNKQSAIGGIFDESELSDMFDKVLLSVEKLPMCSHGAHNEAEKASKPSTFDGGKGRPKRQGKKKETIDLRTVLVLCAQAVSANDSRTANELLKQIRQHSSPLGDAMQRLAHYFANGLEARLLGNGAGAQFYTSPITKRITAADYLKSYKVFLSACPFKKFTHFFANKMIMKAAQKAETLHIIDFGILYGFQWPILIKFLSERDNGPPKLRITGIEFPQPGFRPAERIEETGHRLASYCRRFNVPFEYHAIASRNWETIQVEDLKIESNEFLAVNCLMRFKNLMDETIEVNSPRDSVLHLIRKINPDIFVQSIVNGSYNAPFFATRFREALFHFSAIYDMCDTVIPRENEKRMMIEREIVGRDAMNVVACEGFERIERPETYKQWQARNTRAGFKQLPLNEELMTKFRAKLREWYHRDFVFDEDNNWMLQGWKGRILYASTCWVPA* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2944 737 ProSiteProfiles GRAS family profile. 352 735 IPR005202 -
Dod03g2944 737 MobiDBLite consensus disorder prediction 247 263 - -
Dod03g2944 737 MobiDBLite consensus disorder prediction 267 293 - -
Dod03g2944 737 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 72 736 IPR005202 -
Dod03g2944 737 MobiDBLite consensus disorder prediction 238 300 - -
Dod03g2944 737 MobiDBLite consensus disorder prediction 126 178 - -
Dod03g2944 737 MobiDBLite consensus disorder prediction 328 355 - -
Dod03g2944 737 MobiDBLite consensus disorder prediction 131 178 - -
Dod03g2944 737 Pfam GRAS domain family 361 734 IPR005202 -
Dod03g2944 737 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 72 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2944 Dod-Chr3 61682857 61686417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2944 88 737 GRAS Transcription Factor Family AT1G07530 49.135 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod03g2944 GRAS 1.7e-117 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2944 - - adu:107476834 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2944 03 61682857 61686417 Dod03g2944 03 61682857 61686417 ECH
Dod10g1737 10 38491407 38493780 Dod03g2944 03 61682857 61686417 ECH
Dod10g1736 10 38484308 38487029 Dod03g2944 03 61682857 61686417 PCT
Dod03g2944 03 61682857 61686417 Dod10g1735 10 38456849 38458267 PCT