Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2936 ATGGCTATGGCCAATAGTGTGCTCTACATTGCAACCATTATCTCATTAATGTGGATGGTTGAAGCTCGAATTCCAGGTGTTTACTCTGGTGGAGCATGGGAAAGTGCTCATGCTACCTTCTATGGAGGATCTGATGCTTCCGGCACCATGGGGGGAGCTTGTGGGTATGGAAACTTGTACAGTCAAGGGTACGGAGTGAACACAGCGGCATTGAGCACAGCACTCTTCAACAATGGGCTTAGTTGTGGTGCGTGCTTTGAGATGAAGTGTGCAAACGACAAGCAGTGGTGTCATTCGGGTAGCCCTTCGATCTTCATTACGGCAACTAACTTTTGTCCCCCAAACTATGCTCTTCCAAACGACAATGGAGGGTGGTGCAACCCTCCAAGGCCACACTTTGACCTTGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCAGGAATCGTCCCCGTTGCTTTTCGCCGGGTGCCATGCAGGAGGCAGGGTGGGACAAGGTTCACGATAAACGGGTTCCGTTACTTCAACCTGGTGCTGATCAGCAACGTTGCGGGTGCAGGGGATATCGTGAGGGCGTACGTGAAGGGCACAAGAACGGGGTGGATGCCCTTGAGCCGTAACTGGGGCCAGAACTGGCAGTCCAACGCGGTTTTGGTGGGCCAGGCCCTCTCCTTTCGGGTCACGGCCAGTGACCGCCGCACCTCCACTTCTTGGAACATTGCCCCTCCCAATTGGCAATTCGGTCAAACTTTCACTGGGAAGAATTTTCGTGTCTGA 780 0.5333 MAMANSVLYIATIISLMWMVEARIPGVYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEMKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRRQGGTRFTINGFRYFNLVLISNVAGAGDIVRAYVKGTRTGWMPLSRNWGQNWQSNAVLVGQALSFRVTASDRRTSTSWNIAPPNWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2936 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Dod03g2936 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Dod03g2936 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Dod03g2936 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Dod03g2936 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Dod03g2936 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Dod03g2936 259 Pfam Expansin C-terminal domain 167 243 IPR007117 -
Dod03g2936 259 SMART dpbb_1 68 155 IPR007112 -
Dod03g2936 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Dod03g2936 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Dod03g2936 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Dod03g2936 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Dod03g2936 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Dod03g2936 259 PANTHER EXPANSIN 5 258 - -
Dod03g2936 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Dod03g2936 259 Gene3D - 167 257 IPR036749 -
Dod03g2936 259 Gene3D - 21 161 IPR036908 -
Dod03g2936 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Dod03g2936 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2936 Dod-Chr3 61600627 61603810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2936 1 259 Expansin Gene Family AT2G39700 82.625 1.95e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2936 - - gmx:100809139 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2936 03 61600627 61603810 Dod03g2936 03 61600627 61603810 ECH
Dod03g2936 03 61600627 61603810 Dod08g0796 08 9511813 9515631 ECH
Dod10g1728 10 38417079 38420074 Dod03g2936 03 61600627 61603810 ECH
Dod07g1364 07 37114878 37118522 Dod03g2936 03 61600627 61603810 ECH
Dod10g1728 10 38417079 38420074 Dod03g2936 03 61600627 61603810 PCT