Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2928 ATGAAGCTTTTGGACAAGTACTTGACCATTTGTCGTGCTGCTAAGGTTAAGGCAAGCATTATCATGGCTGAAGCTGATCAAGTCCAGAAAGGGATTGTTGATATGGTTGTTAGGCGTAATATTAGGAGGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAGTCAAGAGGAATTCCAATAAAGCAAACTATACTGCAAAAAATGCTCCTCCATTCTGTGAGATATGGTTTATCCATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTTATGCTTTGTCTTCATGTGAAAACATCGAAACAGAAACCACCTTGGCATCCGAATCATCTGGTTCTAGCAGTCATTATTCTCCCCAAAATTCTGCTCAGAGTCCTGTAGATACTTATTCAGAGGTTGAGAAAGAAAGAGTTAGTAGTCAACTTGTTGAAGCCCAACAAGAATCTGATGCAGCAACAGATGAGGCTTTTGCAGAGCTATTGAAGTTGGAAGCCAAAGCTGCGGAAGCCATAAGGAAGGTCAATTTGTTTGAATCTGCTTGTGCACGGGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGACAACTACAGTACAGGAGCAACAAAAGCTCTTGGATGAAAATGAAGGAATTGTTAGTGAGCTACAAAGAACCATGAGAAGTATTGCCCTCCTAGACAGCTGTTCACAGGAAACAAACCATAGGCGACATGAAGCCGAAGATGAACTATCACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAAGCAGCAGATCAGGCGACAGAAAATGGAAGCCATCCACTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCTGCTCTTTGTAATGGAGTAATTGGATTTGCTGAAGAGTTACCTGAGCTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGCAATTTTTCTGAAAGCTTCAAAATGAGGGAGGGTGGATATGGTTGTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTGTAAGGATGCTCCATCCGCATAACTTGCAAGGGCCAGCAGAGTTTCACCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCACCTGTTGACTTTGCTCGGTGTTTGCCCTGAAGTCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAGTCTTCAAGACTGTCTTCTCCGGAAAAGCAGTGTTTATCCTGTGACATGGAAGATCCGTGCACGATGGATTGGTGAAATTGCTAGTGCTCTCTGCTTCTTACATTCTTCCAAACCTGAAACTATTATCCATGGTGATCTGAAGCCTGAAACTGTACTTCTTGACTCTGAACTTAGTTGCAAGATATGTGAATTTGGCTTTAGCAGGCTAGTGACGGAGGAGTCTCAATATCTTCCTAATTTCCACTTAAGGACTGAGCCAAAGGGTTCTTTTACATATACAGATCCAGAGTTTCAGAGAACTAGAGTACTAACAACGAAGTCTGACATGTACTCCTTTGGTCTCATCATTTTGCAACTCCTGACTGGTCGGACTCCAGTTGGATTAGTTGCTGAAGTATGGAAAGCAGTTTCATCCGGAAGATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGCCTTTGGATGTTGCAACACGATTGGTTGAGCTGGGATTGCATTGCTGCCGACAAAATAGTAGAGACAGGCCAGAGTTAACACCAAACCTGGTGAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAGCGACCTGTGCCATCCTTTTTCTTGTGTCCGATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTTACTTACGAAAGGGACGCCATAACTGAATGGTTGGAAAATGGGCACGACACCTCTCCCATGACAAATTTAAAATTGAGTCACCTGTATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 1983 0.4291 MKLLDKYLTICRAAKVKASIIMAEADQVQKGIVDMVVRRNIRRLVIGAIPENCMKVKRNSNKANYTAKNAPPFCEIWFIHKGKHIWTREASETYALSSCENIETETTLASESSGSSSHYSPQNSAQSPVDTYSEVEKERVSSQLVEAQQESDAATDEAFAELLKLEAKAAEAIRKVNLFESACAREVKLRKEAEDALTTTVQEQQKLLDENEGIVSELQRTMRSIALLDSCSQETNHRRHEAEDELSLIQASISTLWHEKQQIRRQKMEAIHWLERWKSRGQVGAALCNGVIGFAEELPELAEFSLSDLQNATCNFSESFKMREGGYGCIYKGEMLGRTVAVRMLHPHNLQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEVWSLVYEYLPNGSLQDCLLRKSSVYPVTWKIRARWIGEIASALCFLHSSKPETIIHGDLKPETVLLDSELSCKICEFGFSRLVTEESQYLPNFHLRTEPKGSFTYTDPEFQRTRVLTTKSDMYSFGLIILQLLTGRTPVGLVAEVWKAVSSGRLSSILDSSAGEWPLDVATRLVELGLHCCRQNSRDRPELTPNLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYERDAITEWLENGHDTSPMTNLKLSHLYLTPNHALRLAIQGWLCKS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2928 660 Coils Coil 162 182 - -
Dod03g2928 660 PANTHER OS10G0100500 PROTEIN 108 659 - -
Dod03g2928 660 PANTHER OS10G0100500 PROTEIN 1 115 - -
Dod03g2928 660 PANTHER OS02G0152300 PROTEIN 108 659 - -
Dod03g2928 660 PANTHER OS02G0152300 PROTEIN 1 115 - -
Dod03g2928 660 Pfam Protein tyrosine and serine/threonine kinase 322 572 IPR001245 GO:0004672|GO:0006468
Dod03g2928 660 Coils Coil 137 157 - -
Dod03g2928 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 660 IPR013083 -
Dod03g2928 660 Pfam U-box domain 590 659 IPR003613 GO:0004842|GO:0016567
Dod03g2928 660 MobiDBLite consensus disorder prediction 107 131 - -
Dod03g2928 660 ProSiteProfiles U-box domain profile. 589 660 IPR003613 GO:0004842|GO:0016567
Dod03g2928 660 MobiDBLite consensus disorder prediction 107 152 - -
Dod03g2928 660 Gene3D Phosphorylase Kinase; domain 1 293 388 - -
Dod03g2928 660 SUPERFAMILY Protein kinase-like (PK-like) 300 577 IPR011009 -
Dod03g2928 660 CDD RING-Ubox_WDSUB1_like 594 635 - -
Dod03g2928 660 Gene3D Transferase(Phosphotransferase) domain 1 389 589 - -
Dod03g2928 660 ProSiteProfiles Protein kinase domain profile. 316 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod03g2928 660 SMART Ubox_2 593 656 IPR003613 GO:0004842|GO:0016567
Dod03g2928 660 SUPERFAMILY RING/U-box 587 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2928 Dod-Chr3 61517796 61522885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2928 3 657 U-box Gene Family AT2G45910 37.158 3.16e-144 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dod03g2928 PK_Tyr_Ser-Thr 1.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2928 - - gmx:100788846 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2928 03 61517796 61522885 Dod03g2928 03 61517796 61522885 ECH