Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2924 ATGAGCAAATTCTACGAGGTGACAGCTCGGTTGGAACAATCATTGGCTGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTAGTTCTTTCCCAGTTCAAAAGAGCCAAAGGAAGGGTCGATGAACCTGACATCAAGTTGTATGAGGATATGTTGTCCTTGTACAACAATAACAGTGATGCAGCCGCAGATCCAGCTGTTATACGTCAATTAGCTGAAAAGTTGCAATTGATGGGAATAGCTGATCTTACACAAGAATCGCTTGCTTTGCATGAGATGGTGGCAACAAGTGGTGGGGATCCAGGGGCACACATTGAGAAGATGTCGATGTTATTGAAGAAGATAAAAGATTATGTTCAAACAGAAAATCTAGTAATAATGGATGATAATGTAGGAGGAAAAGGCCATTCTTCAAGAGTCAGTGGACGAGAGACAAATGAAAGGAATCATCAGACCCCTGTTATCCCTGATGATTTTCGATGTCCAATTTCTCTGGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACATATGAGCGGTCTTCCATTGAGAAGTGGTTGCAAGCAGGGCATGGAACATGCCCCAAAACACAGCAAACCCTCAGTAGTACTGTTCTCACTCCCAACTTTGTCCTAAGAAGCCTCATTGAACAGTGGTGTGAAGCCAATGGCATAGAACCACCCAAGCGACCCAGTAATTCTGAACCTAGTAAATCAACATCAGCTTATGCACCAGCTGAGCCAAGCAAGATCGAAAATCTTCTCCAAAGGCTCACTTTTGGCAGTCCTGAAGACCAAAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCGAAGCGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCTTTCCTTGTTAGTCTCCTCTCAGTGCCTGATTCTCGCACTCAAGAGAATGCTGTTACTGCCCTTCTCAATCTTTCCATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCGGTTCCAGGCATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCGGCGACACTCTTCAGCCTTTCGGTAGTAGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATACCACCACTAGTGGCACTGCTAAATGAGGGTACACAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATATACCAGGGTAACAAGGGAAAGGCAGTGAGGGCTGGTGCTATTCCCACACTGATGCAACTGCTGACAGAACCTAATGGAGGTATGGTGGATGAAGCATTGGCCATCTTGGCAATATTGTCTAGCCATCCTGATGGGAAGGCTTCCATTGGTGCCTCGGAGGCAGTGCCAATTTTGGTAGAGTTTATTCAGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCAGTTTTAGTGCACCTTAGCTCTGGAGATCAACAATATCTTGCACAGGCACAGGAGCTAGATGTGATGGATCCGTTGTTGGATTTGGCTCAAAATGGTACAGACAGAGGAAAGAGAAAGGCAACACAACTGCTAGAACGAATGAGCAGGTTCCTCGAGCAGCAGCAGCAGCAGCAGGAGGAGGTAGTTCAGACACAAACCGAACTTCAACCTCAGAATGAGGATGCCCAACTGCCCCTTGTCACTAACGTTGATGATGCCTGA 1719 0.4567 MSKFYEVTARLEQSLAGISYDKLDISDEVKEQVELVLSQFKRAKGRVDEPDIKLYEDMLSLYNNNSDAAADPAVIRQLAEKLQLMGIADLTQESLALHEMVATSGGDPGAHIEKMSMLLKKIKDYVQTENLVIMDDNVGGKGHSSRVSGRETNERNHQTPVIPDDFRCPISLELMKDPVIVSTGQTYERSSIEKWLQAGHGTCPKTQQTLSSTVLTPNFVLRSLIEQWCEANGIEPPKRPSNSEPSKSTSAYAPAEPSKIENLLQRLTFGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPFLVSLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVALLNEGTQRGKKDAATALFNLCIYQGNKGKAVRAGAIPTLMQLLTEPNGGMVDEALAILAILSSHPDGKASIGASEAVPILVEFIQNGSPRNKENAAAVLVHLSSGDQQYLAQAQELDVMDPLLDLAQNGTDRGKRKATQLLERMSRFLEQQQQQQEEVVQTQTELQPQNEDAQLPLVTNVDDA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2924 572 ProSiteProfiles U-box domain profile. 161 235 IPR003613 GO:0004842|GO:0016567
Dod03g2924 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Dod03g2924 572 CDD RING-Ubox_PUB 166 208 IPR045210 -
Dod03g2924 572 SMART Ubox_2 165 228 IPR003613 GO:0004842|GO:0016567
Dod03g2924 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 342 IPR000225 GO:0005515
Dod03g2924 572 MobiDBLite consensus disorder prediction 547 564 - -
Dod03g2924 572 Gene3D - 244 567 IPR011989 -
Dod03g2924 572 SUPERFAMILY ARM repeat 260 548 IPR016024 -
Dod03g2924 572 PANTHER U BOX DOMAIN-CONTAINING 1 551 - -
Dod03g2924 572 MobiDBLite consensus disorder prediction 239 255 - -
Dod03g2924 572 MobiDBLite consensus disorder prediction 547 572 - -
Dod03g2924 572 MobiDBLite consensus disorder prediction 147 161 - -
Dod03g2924 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 235 IPR013083 -
Dod03g2924 572 Coils Coil 523 546 - -
Dod03g2924 572 Pfam Armadillo/beta-catenin-like repeat 289 328 IPR000225 GO:0005515
Dod03g2924 572 Pfam Armadillo/beta-catenin-like repeat 372 410 IPR000225 GO:0005515
Dod03g2924 572 MobiDBLite consensus disorder prediction 233 255 - -
Dod03g2924 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Dod03g2924 572 SUPERFAMILY RING/U-box 150 238 - -
Dod03g2924 572 Pfam Neurochondrin 413 548 IPR008709 -
Dod03g2924 572 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 551 - -
Dod03g2924 572 SMART arm_5 412 452 IPR000225 GO:0005515
Dod03g2924 572 SMART arm_5 371 411 IPR000225 GO:0005515
Dod03g2924 572 SMART arm_5 330 370 IPR000225 GO:0005515
Dod03g2924 572 SMART arm_5 289 329 IPR000225 GO:0005515
Dod03g2924 572 SMART arm_5 453 493 IPR000225 GO:0005515
Dod03g2924 572 SMART arm_5 495 535 IPR000225 GO:0005515
Dod03g2924 572 MobiDBLite consensus disorder prediction 137 163 - -
Dod03g2924 572 Pfam U-box domain 162 232 IPR003613 GO:0004842|GO:0016567
Dod03g2924 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 382 424 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2924 Dod-Chr3 61446869 61450702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2924 2 558 U-box Gene Family AT3G46510 71.199 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2924 - - gmx:100812160 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2924 03 61446869 61450702 Dod03g2924 03 61446869 61450702 ECH