Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2909 ATGTCCGCAGTTCTCGACATGGCTCTCGACGACATCATTAAGACCAGCAAGCAAGCATCCGGACCCGCCCGCCGCCTCTCCAGCCGCGCCGCCAACCGTGCCGCACCCTACTACGCCGCCGCCGCCACCAAGGCGCGGGAGATGACGTGGCAGCAGGATTCGTTTGCGCCTTACATAGAAACGGGGACAAAGCTCTACATCACTAATTTGGATTTCGGCGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGTTATGGTGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCGCGACAAGCTGATGCTATTGCTGCTGTGAAGAGATACAGCAATGTTCAACTAGACAGGAAACCAATGAAGGCAGAGATTGTGAGAACAAACATTTCAACATCTGGCGTGGCTTCTGCTGCAAGTGGAGCTACTGGAAATTCCAATGGATTTCCCGAAGTGGACAAGGAAGAGGTGGGGCATTTGGAAGGCCAGGCGGTAGTGGGCAAGGCATTCAAAGGGGTCGAGGACGTGGAAGAGGCCGTGGGGGAGGTCGTCCCGAAAATTTATCTGCGATGA 609 0.5271 MSAVLDMALDDIIKTSKQASGPARRLSSRAANRAAPYYAAAATKAREMTWQQDSFAPYIETGTKLYITNLDFGVSNDDIKELFSEVGDLKRYGVHYDRSGRSKGTAEVVFSRQADAIAAVKRYSNVQLDRKPMKAEIVRTNISTSGVASAASGATGNSNGFPEVDKEEVGHLEGQAVVGKAFKGVEDVEEAVGEVVPKIYLR* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2909 202 CDD RRM_THOC4 63 137 - -
Dod03g2909 202 SUPERFAMILY RNA-binding domain, RBD 48 156 IPR035979 GO:0003676
Dod03g2909 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 140 IPR000504 GO:0003723
Dod03g2909 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 133 IPR000504 GO:0003723
Dod03g2909 202 Gene3D - 38 173 IPR012677 -
Dod03g2909 202 SMART rrm1_1 64 136 IPR000504 GO:0003723
Dod03g2909 202 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 177 - -
Dod03g2909 202 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2909 Dod-Chr3 61285797 61291183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2909 62 178 Eukaryotic Initiation Factors Gene Family AT1G71770 27.737 3.79e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2909 K12881 - qsu:111988658 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1703 10 38208791 38211268 Dod03g2909 03 61285797 61291183 PCT