Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2898 ATGAAGAGAGTCATACACGACGAGGGTGATGACTTAGCTATGGTTAATTGCTTGAAGTTACTAACCAAAGTTGGTGAAAGCAATAAAACCAACCACAAGAAAGGTGGTGGTGGTGGTGGCGGTGGTTTTAAGTGCAAGACATGTCACAGGCAATTCCTATCTTTTCAAGCCCTTGGGGGACACAGAGCCAGCCACAAGAAGCTCAAGCTCATGGATGCAAACCTTTCTTCAAGCTCATCATTGACCATGAAAAGAACAAAGACTCACATGTGCCCTATCTGTGGGCTTGAGTTTCCTGTTGGACAAGCGCTTGGAGGGCACATGAGAAAGCATAGAAATGCTACAAATGATGGATTGGTGAATATTCATGATCATCGTCCCGTGACCAAATCTGATAGTGCCAGAAGGTTTGGTTTGTGCTTGGATTTGAACCTGACACCCTCCGAGAATGATCTGAAGCTTAACTTATGGACTCCTCCTGTGTTAAATTGTCTAATTTGA 501 0.4411 MKRVIHDEGDDLAMVNCLKLLTKVGESNKTNHKKGGGGGGGGFKCKTCHRQFLSFQALGGHRASHKKLKLMDANLSSSSSLTMKRTKTHMCPICGLEFPVGQALGGHMRKHRNATNDGLVNIHDHRPVTKSDSARRFGLCLDLNLTPSENDLKLNLWTPPVLNCLI* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2898 166 SMART c2h2final6 43 65 IPR013087 -
Dod03g2898 166 SMART c2h2final6 89 111 IPR013087 -
Dod03g2898 166 PANTHER ZINC FINGER PROTEIN ZAT5 8 165 - -
Dod03g2898 166 SUPERFAMILY beta-beta-alpha zinc fingers 43 111 IPR036236 -
Dod03g2898 166 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Dod03g2898 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Dod03g2898 166 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 8 165 - -
Dod03g2898 166 Pfam C2H2-type zinc finger 89 112 - -
Dod03g2898 166 Pfam C2H2-type zinc finger 43 67 - -
Dod03g2898 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Dod03g2898 166 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Dod03g2898 166 Gene3D Classic Zinc Finger 41 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2898 Dod-Chr3 61219861 61220624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2898 10 156 C2H2 Transcription Factor Family AT3G46080 48.101 9.69e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2898 zf-C2H2_6 2.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2898 - - adu:107476874 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2898 03 61219861 61220624 Dod03g2898 03 61219861 61220624 ECH
Dod10g1695 10 38073160 38074099 Dod03g2898 03 61219861 61220624 ECH
Dod10g1695 10 38073160 38074099 Dod03g2898 03 61219861 61220624 PCT