Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2890 ATGGCTCCATCAAAAGTGGATAATTCGAAGAAGAATGATCCGAAGGCACAAGCATTGAAAACTGCGAAAGCAGTGAAATCAGGAGGAGCAACAACGTTCAAGAAGAAGAAGGGGAAGAAGATCCGAACCTCCGTTACGTTCCACAGGCCGAAGACACTGAAGAAGGATAGGAACCCTAAGTATCCTCGGATAAGTGCTACGCCGAGGAACAAGCTCGACCATTACCAGATCCTGAAGTACCCTCTCACCACTGAGTCCGCCATGAAGAAGATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTACGACATTCAGGCCAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGTTGACTCCTGATTACGATGCATTGGATGTAGCGAACAAGATTGGGATCATCTAA 474 0.462 MAPSKVDNSKKNDPKAQALKTAKAVKSGGATTFKKKKGKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2890 157 TIGRFAM uL23_arch: ribosomal protein uL23 81 157 IPR019985 GO:0003735|GO:0005840|GO:0006412
Dod03g2890 157 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 157 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod03g2890 157 MobiDBLite consensus disorder prediction 1 42 - -
Dod03g2890 157 Gene3D - 38 157 IPR012677 -
Dod03g2890 157 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 157 - -
Dod03g2890 157 Hamap 50S ribosomal protein L23 [rplW]. 77 157 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod03g2890 157 Pfam Ribosomal protein L23, N-terminal domain 15 66 IPR005633 -
Dod03g2890 157 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 74 150 IPR012678 GO:0003735|GO:0005840|GO:0006412
Dod03g2890 157 Pfam Ribosomal protein L23 77 139 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod03g2890 157 ProSitePatterns Ribosomal protein L23 signature. 135 150 IPR001014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2890 Dod-Chr3 61077519 61079787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2890 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 86.624 1.95e-68 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2890 K02893 - jre:109021970 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2890 03 61077519 61079787 Dod03g2890 03 61077519 61079787 ECH
Dod10g1688 10 38011227 38013353 Dod03g2890 03 61077519 61079787 ECH
Dod10g1688 10 38011227 38013353 Dod03g2890 03 61077519 61079787 PCT