Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2857 ATGAACAATTATGGGAAAAGAGGTCTGGCAGAACAAGATCATATGTTTTTTGACAAAAAGAGACTCAATAATGGAGTAGTTAATGGAGGGCTGGGCTCTGGGTCATCAAATGAAGATGACACGAGATTTATCAAGGTAACCGAAGATAGAAACAATGGGTTGAGGGGACTGATTCAAATCCATGAGAGCTTGCAGAATTCGCAACAACCACCTCAAGGACCAGTCGTATGCTGGGGGAGATTTCTCCCTGTAAGATCAATAAAGGTTCTGCTGGTGGAAGATGATGATTCAACACGGCATGTTGTGCGTGCTCTTTTACGAAATTGTAGTTACGAAGTCACTGCTGTTTCAAATGGTCTTCAAGCATGGAAAATCCTAGAAGATCCAGGAAATCACATTGATCTCATCCTAACAGAGGTAGCTATGCCTATTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCTACAAAACACTGAAAAATATTCCCGTGATTAGTAAGTGCCATTCCGAAATTATACTTTCTATCAAATCTAAGTATTTGTTTTCAATGATTATTACTCATCTTGTGTTTTACTTTACCACACATGTTGAAATGCATGCAGTGATGTCATCTCATGATTCTATGGGAATAGTCTTTAAGTGTTTGTCAAAAGGTGCAGTTGATTTTTTGGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGGCACACACACCAGAAAATCTGCAAAGACAAGTAATGATGCATCTGAAAACAATAGTGACAGCAGTGATGAGAATGACTGTGGAAGCAGAGGCTTGAGTGTTCGAGATGGAAGCGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGTTCAAGTTGGCAGTCCTCATCCAGTTTCACCTCATAAACTATTGGTTGATGCCCCTGATAGCACGTGTGCCGAAGTGATGCATACAAAGCCTGAAAAAGTTAGTAGTAGGAGGGTGCATGCAACAGAAAAAGAGTGCCATGAACTGATTGATCATCTTGATAATGTTGCAATGGGTAAAGATTTGACTATGGGAATATCTTTGAATATGCAACTAGAGCATCCACTTGAGGGGTTGTCTAGCAAACCTTTGGGTAAAGGGATGCATATGATGTCTAATGTAGATGGTAAGCAACTCAATAAAGGACATGGTAATGTCTGTGAAAAAGGACAACTGGAATATAACGGTGATAAAAACAGGATACAAGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAGCAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGATTTTCTGGTTTCTCACAATCTAAAGCAAGTAGTTCCTTTAAACGGCATCCATCCCGTGAACTGACTTTGAAAAGGCTGGGAGAAGTAAGAGATGCTAAAAATGTCACAGGTGACGAATGCAATGTTTTGAGACATTCATATCAGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACCGGAAATGTTGGAAGCTGTTCACCACTAAACAATAGCTCAGTTGCACCAAATACAGAAACATTACCCAACTTCCCATCTCATTCAAATAGCACTCCTCCAAATCAACAATCTAGTGGGAGCAACAACATCAATGACGTAGCCTCCACTAATGAATATATTAGCACCAAACCTGAAACTTTGGAAAAGAAGCCAGAATCAGTAAGAGGGAATGGCTTTTTCAATTCTTCTGCTTTGCAAACTGTGCAGAACAATAGTATCTCTTCATCTCAAAAGAAAATTTCTCCCCAGGAAGAATATGCAGAAATCGTTAAAGGACAAGTGGGCGGCTCTGAACAAGGACTTCAAGTTTATCACAATCACTCTCAGATTCACCATTATAATCACATTGCTCACAAAGCTGCAATGGATCTTCAGTCAGATCATGATGATCTCTTAATGAAAAGCTCCTCCAAAGCTGCCCAGCAATGTGTATCATCAAATGAGTTTGGTGGGCCAGCAGAAAGAAATGCTGCAAACTTTGGCGCAGATGGAAATGCTTCAAACTTTGGCGCAGATGGAAATGCTGCCCAGAGTGATCATGGGAGCAATGGACAGGATGGAAGCAGCAACGCCTGGGCAATTAGAACTATGAACGGGGAAAACAGCAATGACGCAAGTGGGAACATTGGTGTAGGTTTCATTGACAGGAAAAACATTGGGAATGGAGCAGATGAAGAACGAATTGCATTGAGAGAGGCCGCTCTGACAAAATTTCGTCAGAAGAGAAAAGAAAGATGCTTTGAGAAGAGGGTTCGATACCACAGCAGGAAAAAGGTAGCAGAACAGCGGCCACGTATTAGGGGACAATTTGTTCGAAGGATTGTGTCTGACACCAAGGAAGAAAAAGATAAACAAAGGGACAACATGGTACCCGTAGATAGTTCTACAGACGTTCCACAATAA 2508 0.4111 MNNYGKRGLAEQDHMFFDKKRLNNGVVNGGLGSGSSNEDDTRFIKVTEDRNNGLRGLIQIHESLQNSQQPPQGPVVCWGRFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKILEDPGNHIDLILTEVAMPILSGIGLLCKIMSYKTLKNIPVISKCHSEIILSIKSKYLFSMIITHLVFYFTTHVEMHAVMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESGTHTRKSAKTSNDASENNSDSSDENDCGSRGLSVRDGSDNGSGTQSSWTKCLVQVGSPHPVSPHKLLVDAPDSTCAEVMHTKPEKVSSRRVHATEKECHELIDHLDNVAMGKDLTMGISLNMQLEHPLEGLSSKPLGKGMHMMSNVDGKQLNKGHGNVCEKGQLEYNGDKNRIQENQAMNVVDVTDSSSPQAESRDLNTPNGFSGFSQSKASSSFKRHPSRELTLKRLGEVRDAKNVTGDECNVLRHSYQSAFSKYNTASSANQAQTGNVGSCSPLNNSSVAPNTETLPNFPSHSNSTPPNQQSSGSNNINDVASTNEYISTKPETLEKKPESVRGNGFFNSSALQTVQNNSISSSQKKISPQEEYAEIVKGQVGGSEQGLQVYHNHSQIHHYNHIAHKAAMDLQSDHDDLLMKSSSKAAQQCVSSNEFGGPAERNAANFGADGNASNFGADGNAAQSDHGSNGQDGSSNAWAIRTMNGENSNDASGNIGVGFIDRKNIGNGADEERIALREAALTKFRQKRKERCFEKRVRYHSRKKVAEQRPRIRGQFVRRIVSDTKEEKDKQRDNMVPVDSSTDVPQ* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2857 835 ProSiteProfiles CCT domain profile. 766 808 IPR010402 GO:0005515
Dod03g2857 835 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 203 801 - -
Dod03g2857 835 MobiDBLite consensus disorder prediction 247 301 - -
Dod03g2857 835 SUPERFAMILY CheY-like 203 247 IPR011006 -
Dod03g2857 835 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 167 IPR045279 GO:0009736
Dod03g2857 835 PANTHER TWO-COMPONENT RESPONSE REGULATOR 203 801 IPR045279 GO:0009736
Dod03g2857 835 SUPERFAMILY CheY-like 85 166 IPR011006 -
Dod03g2857 835 MobiDBLite consensus disorder prediction 247 283 - -
Dod03g2857 835 Gene3D - 86 286 - -
Dod03g2857 835 Pfam Response regulator receiver domain 89 166 IPR001789 GO:0000160
Dod03g2857 835 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 29 167 - -
Dod03g2857 835 SMART REC_2 87 238 IPR001789 GO:0000160
Dod03g2857 835 MobiDBLite consensus disorder prediction 705 726 - -
Dod03g2857 835 MobiDBLite consensus disorder prediction 809 825 - -
Dod03g2857 835 Pfam CCT motif 766 807 IPR010402 GO:0005515
Dod03g2857 835 MobiDBLite consensus disorder prediction 440 469 - -
Dod03g2857 835 MobiDBLite consensus disorder prediction 809 835 - -
Dod03g2857 835 MobiDBLite consensus disorder prediction 440 476 - -
Dod03g2857 835 ProSiteProfiles Response regulatory domain profile. 88 242 IPR001789 GO:0000160
Dod03g2857 835 MobiDBLite consensus disorder prediction 678 726 - -
Dod03g2857 835 MobiDBLite consensus disorder prediction 525 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2857 Dod-Chr3 60597155 60614743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2857 34 528 Response Regulator Gene Family AT5G60100 42.801 3.19e-85 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Dod03g2857 Response_reg 1.1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2857 K12129 - gmx:100785796 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2857 03 60597155 60614743 Dod03g2857 03 60597155 60614743 ECH