LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g2851	ATGATGATGTTCGATCTTAATCTGAATGCGGTTGACTCGAGTGTTTCGACTCAGAACGGCGACTCGGCGGCGCTGCTGTCGTCGGAGAACCAAATGGCGGAATCCGGAACCTCGAATTCCTCCGTCGTGAATGCGGAGGGGTCCAGCAACAACAACGGCGGCGGTGTCGGCGACGAGGACTCGTGCTCCACGCTCGTCGCCGCCGACGAAGACAACGCTCTCACCTACAACTTTGACATCCTGAAGGTGGGGGCATCAAACAACGACGTCGTAACGAAGGAGCTGTTCCCAGTGAATACGTCGTCGTTTCGAGGAACGAATGGCTCGTTGGATCTCTCGTTCGATCACCAGGGTGAGATGAAGATGGTTCAGGCTCATCAACAGCAACAGCAACAGTCTCAGCAACCAGCGAAGAAGAGTAGGAGGGGACCAAGGTCTCGTAGCTCGCAGTACAGAGGAGTCACCTTCTACAGAAGAACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGCGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCAATTAAGTTCAGGGGAGTTGAAGCTGACATCAATTTCAATCTGATTGATTATGAGGATGATCTCAAAAAGATGAAGAATCTATCCAAGGAGGAATTTGTGCACATACTCCGTCGCCAAAGTACTGGTTTCTCAAGGGGGAGTTCGAAGTACCGAGGAGTGACACTCCACAAGTGTGGTCGTTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACTGTGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCTGTGACTAACTTTGAGCCAAGTTCATATGAAGGAGAGATGAAATCTGCAGCCATCAATGAAGGTGGAAGTCACAATCTTGACCTCAATTTGGGCATAGCAACCCCAGGCCAAGGTCCCAAAGAAAATAAGGGGCAACTTCAGTTCCCCTTCGCCCCTTACAGCATGCATACTGGAAGAACAAGGATGGAAACCAATTTTAATTCAGTAATTGGTAATCCATCTTTGAAAAGGCTGGTTGCAACGGAAGAGCATCCTTCTGTGTGGAATGGCATGTATCCTAGTTTCTTTCCCAATGAGGAGATCAGAGGGGATAGAATCAGCATAGATCATTCCAAAGGACTCTCCAATTGGGCGTGGCAAAGGCATGGCCAAGTAGCTGCTACCCCAATGCCACCGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCAAATGCCATCTTTCAAGCCAAGTCTATCAACTCAATTCCCCAGAGTCTCTGTTTCACTTCATCCAGTGCACCTATCAACAATGCATCTCAATATTATTACCAGGCTAAGTCCCCTCAGGCACCGCCCTAG	1458	0.489	MMMFDLNLNAVDSSVSTQNGDSAALLSSENQMAESGTSNSSVVNAEGSSNNNGGGVGDEDSCSTLVAADEDNALTYNFDILKVGASNNDVVTKELFPVNTSSFRGTNGSLDLSFDHQGEMKMVQAHQQQQQQSQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLIDYEDDLKKMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDCEVEAARAYDKAAIKCNGREAVTNFEPSSYEGEMKSAAINEGGSHNLDLNLGIATPGQGPKENKGQLQFPFAPYSMHTGRTRMETNFNSVIGNPSLKRLVATEEHPSVWNGMYPSFFPNEEIRGDRISIDHSKGLSNWAWQRHGQVAATPMPPFSAAASSGFSISATFPSNAIFQAKSINSIPQSLCFTSSSAPINNASQYYYQAKSPQAPP*	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g2851	485	MobiDBLite	consensus disorder prediction	122	139	-	-
	Dod03g2851	485	PRINTS	Ethylene responsive element binding protein signature	243	254	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	PRINTS	Ethylene responsive element binding protein signature	281	301	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	SUPERFAMILY	DNA-binding domain	149	206	IPR016177	GO:0003677
	Dod03g2851	485	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	3	454	-	-
	Dod03g2851	485	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	3	454	-	-
	Dod03g2851	485	Gene3D	AP2/ERF domain	241	300	IPR036955	GO:0003700\|GO:0006355
	Dod03g2851	485	Gene3D	AP2/ERF domain	149	207	IPR036955	GO:0003700\|GO:0006355
	Dod03g2851	485	MobiDBLite	consensus disorder prediction	28	57	-	-
	Dod03g2851	485	Pfam	AP2 domain	150	198	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	Pfam	AP2 domain	241	291	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	ProSiteProfiles	AP2/ERF domain profile.	242	299	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	MobiDBLite	consensus disorder prediction	121	151	-	-
	Dod03g2851	485	SUPERFAMILY	DNA-binding domain	241	300	IPR016177	GO:0003677
	Dod03g2851	485	SMART	rav1_2	242	305	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	SMART	rav1_2	150	212	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	CDD	AP2	241	301	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	CDD	AP2	150	205	IPR001471	GO:0003700\|GO:0006355
	Dod03g2851	485	ProSiteProfiles	AP2/ERF domain profile.	150	206	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g2851	Dod-Chr3	60440482	60444707	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g2851	135	325	AP2-EREBP Transcription Factor Family	AT4G36920	83.505	1.66e-98	301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Dod03g2851		AP2	4.6e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g2851	K09284		-	gmx:100788303	626.706

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g2851	03	60440482	60444707	Dod03g2851	03	60440482	60444707	ECH
	Dod10g1658	10	37612076	37616445	Dod03g2851	03	60440482	60444707	ECH
	Dod10g1658	10	37612076	37616445	Dod03g2851	03	60440482	60444707	PCT