Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2842 ATGGGGAAAACACGTGGTATGGGAGCTGCTCGCAAGTTGAAGTCCCACCGAAGAAGGCAGAGGTGGGCTGACAAGGCCTACAAGAAATCAAATCTTGGAAACGAATGGAAAAAGCCGTTTGCTGGATCATCCCATGCCAAAGGCATTGTCCTTGAAAAAATTGGCATTGAGGCTAAGCAGCCAAACTCTGCTATTAGAAAATGTGCCCGAGTGCAGTTAATCAAGAACGGCAAGAAGATTGCGGCTTTTGTGCCAAATGATGGTTGCTTGAACTTTATCGAAGAAAATGATGAAGTGCTTATTGCTGGTTTTGGTCGTAAAGGTCACGCTGTCGGAGATATTCCTGGAGTCCGATTTAAGGTTGTGAAGGTATCCGGGGTATCTCTTCTGGCACTCTTTAAAGAAAAGAAGGAGAAGCCCAGGTCTTAA 429 0.4545 MGKTRGMGAARKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2842 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dod03g2842 142 MobiDBLite consensus disorder prediction 9 24 - -
Dod03g2842 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Dod03g2842 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Dod03g2842 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Dod03g2842 142 MobiDBLite consensus disorder prediction 1 28 - -
Dod03g2842 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dod03g2842 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
Dod03g2842 142 Pfam Ribosomal protein S12/S23 32 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dod03g2842 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Dod03g2842 142 Gene3D - 25 142 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2842 Dod-Chr3 60301276 60303391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2842 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.366 2.18e-94 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2842 K02973 - vvi:100248226 284.263