Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2821 ATGGAAATTGATCTGAACCATGCAGTGGCTGAGGATGAGAAGAATGCGCTATGCAATGGGGAATGTGAGAAAGGTGCTTGTGTTTGCTGTCTTTCCTTCTCTTCAACATGTACACCTTCTAGTGCCTCTTCAGGTTCTGTGTCTTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACCTCACTCCCTAAGAAAGGAAACGTTGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTATCCTTTCACACCAATGGAGATTCCCACCTATGATATTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTCCCCCAAGCTGAGTTGGCAGATATGAATTTGGAGGGAAAAGAGCTTGAGGAATTGGCAGCAGATGAGGAAGGAAATGGAGGGTCACCTATAGAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCCTCTGACACTAGCACTCATGGGGGTTTCTCTGTCCCTCGTAGAGCCGCTGAAGATTGTTTTCCTCCTTTGGATTATAAACAGCAGAGGCCATCTCAAGAGCTTGTAGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTTAACCAAAAGAATCTTGTTTCTGGGGATGCAGTGCTTTTTCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTAGACCAAGAAATGGTCTTCCTGAATCAATTGTCGGAAACCAGAACAGTTATCCCAGTTTCCTTTCTTCTGTGGCCAATGCTATATCCACCAGGAGCATGTTTCATGTTTTCTACAGTCCAAGAGCTAGTCATGCAGACTTTGTTGTGCCCTACCAAAAATATGTTAAAAGCATCAATAATCCAGTGACCATTGGAACAAGATTCAAAATGAGACTTGAAATGGATGAATCTCCAGAAAGAAGGTGCAGTGGTATGGTGATTGGAACGAGTGATTTGGATCCATATAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAAGATATTGAGAATAATCATCAAGACCGAGTATCTCCATGGGAGATTGACCCCTCTGCTTCTCTCCCTCCCTTAAGCATTCAGTCTTCCCCAAGGCTGAAGAAACTAAGGACGGATCGGCAGCTTGCCTCACACAGTCACCTCATCACTGGCAGCAGTGGATTGGTGGACTTTGAGGAGTCTGTAAGATCACCGAAGGTCTTGCAAGGTCAAGAAAAGGCAGGTTTTCTGTCACTCTATTATGGATGTGACACAGTAACCAACAGGCCAGGTTTTGAGATGAGCTCTCCAAGTCATCCAAATCTTGCATCAAATGGAGCAAGAAAAGTTACCCCTTCTGAGCTTATGAGTGTTCGCCCTTTTAGTTATGCAGGCTTCACTGAAACTACTAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGAAATCCCTGAGGGGAAAGGTTGATTTGAGCCTTGGTTCTTGGAGCAAAGCCAATGTAGGTTGCACAACTTTCAACCTCCATCAGGCAACCAAACCCACCAACTTTCAGTCTTTAGGACCAGGAGTTCTTCAATCTGCATATTTTCCTTTTGTGGATATTCACAAAGCTGGTCAAGCTAGCATGTTTTGCTCTAAACCCACCAGTTTCCAGAGAGACAGTGTCCCATTTAACTACACACCTTTCACCCAGACTCAGGGAGTGATCAAGAGAAATGAAGTTGGAAGATCAGATGTCCCAAATGAGGATAATATGCTGGACAAAACTTCTGATGCTGCTTCATTAACTGCCGATATGAGGATTCCAAGTGACAACAATGTTAATAAGGCGAAGGTAAATGCCTGCAAACTATTTGGTTTTCCTTTGTCTGGGGAAACTGCCACCCAAAATTTACAGAACCATGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTAGGAAGAGCCATTGATTTGTCAAGGTTAAGCAGCTACAATGACCTGCTGAGTGAACTAGAGATACTATTTGACATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAGGATCCTGTACACTGACAGTGAGAATGATATCATGGTTGTGGGAGATGACCCTTGGCATGAGTTTTGCAATGTGGTGTCCAAGATCCATATATACACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCAGTGATGATACCAATAGCTCTCTGGAACAGGCACCAGTCATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTATTCTCCAACAGTTGTTAGAGTCTAA 2418 0.4404 MEIDLNHAVAEDEKNALCNGECEKGACVCCLSFSSTCTPSSASSGSVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFYPFTPMEIPTYDIQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELADMNLEGKELEELAADEEGNGGSPIESTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNSYPSFLSSVANAISTRSMFHVFYSPRASHADFVVPYQKYVKSINNPVTIGTRFKMRLEMDESPERRCSGMVIGTSDLDPYRWPKSKWRCLMVRWDEDIENNHQDRVSPWEIDPSASLPPLSIQSSPRLKKLRTDRQLASHSHLITGSSGLVDFEESVRSPKVLQGQEKAGFLSLYYGCDTVTNRPGFEMSSPSHPNLASNGARKVTPSELMSVRPFSYAGFTETTRFPRVLQGQEICPLKSLRGKVDLSLGSWSKANVGCTTFNLHQATKPTNFQSLGPGVLQSAYFPFVDIHKAGQASMFCSKPTSFQRDSVPFNYTPFTQTQGVIKRNEVGRSDVPNEDNMLDKTSDAASLTADMRIPSDNNVNKAKVNACKLFGFPLSGETATQNLQNHAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELEILFDMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMISDDTNSSLEQAPVIMEASKSSSVGQPDYSPTVVRV* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2821 805 Gene3D - 163 267 IPR015300 -
Dod03g2821 805 SUPERFAMILY CAD & PB1 domains 680 756 - -
Dod03g2821 805 Gene3D - 672 766 - -
Dod03g2821 805 CDD B3_DNA 163 265 IPR003340 GO:0003677
Dod03g2821 805 Gene3D - 329 400 - -
Dod03g2821 805 PANTHER AUXIN RESPONSE FACTOR 19 793 - -
Dod03g2821 805 ProSiteProfiles PB1 domain profile. 677 761 IPR000270 GO:0005515
Dod03g2821 805 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Dod03g2821 805 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 793 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod03g2821 805 SMART B3_2 165 267 IPR003340 GO:0003677
Dod03g2821 805 Pfam Auxin response factor 291 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod03g2821 805 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Dod03g2821 805 SUPERFAMILY DNA-binding pseudobarrel domain 159 278 IPR015300 -
Dod03g2821 805 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2821 Dod-Chr3 60091512 60097463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2821 45 805 B3 DNA Binding Superfamily AT5G60450 60.183 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod03g2821 B3 9.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2821 - - gmx:100816621 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2821 03 60091512 60097463 Dod03g2821 03 60091512 60097463 ECH
Dod10g1640 10 37319846 37326631 Dod03g2821 03 60091512 60097463 PCT