Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2813 ATGGCTTCCTCCAAATCCGAAAAGACCAAGAAGAAAGCCAAAACCGAAGAAGAAGAAGAAGGAGCAGCATTCAAAACCGAAAAGAAGAAGAAGAAAACCAAAACCAAAACCGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAGCAGCATCCAAAACCGAAAAGAAGAAGAAAACCAAAATCGCAGAAGAAGAAGAAGCATCCAAAACTGAAAAGAAGAAGAAGAAGACCAAAACCGCAGAAGAAAAAGAAGCAGCATCCAAAACTGAAAAGAAGAAGAAGAAGACCAAAACTGCAGAAGAAGAAACCTCCAAAGCCGTTAGCAAATCGAGGAAAGAGAAGGAGAAGGAGAACAAGAAGAACAACAACAGTAAGAAGAAGAAGAAGCTCAAGCTCATCAATGGAATCTCGAAGCACCACCGCGATGAATCGTTGATTGTTCCGAGCTCAAGCACCGAGTCACAACAAAAGCAAGAAGAGGGTACCACTGTGCTTGCCAATGGGGAAAAACCTAAGAAACCGAAACGAAAGCGAGAGAAAGAGGAGAAAGAGGAGGAAGAGGAAGGAGACGCGAAGACGCATGTGTTTCCGATGAATCGTATAAGGACGATGATTAAAGGCGAAGATCCAGATTTGCGCGTTTCTCAGGAAGCCATTTTGGCCATCAACAAAGCTACGGAGAAGTTCCTTGAACAGTTCACGCAGGACGCTTATGTTCGTTGTGTTCAGGAGCGTAGGAAGTCTCTGAGTTACAAACAACTAGCACATGTTGTAAGCAAGCAGAGGAGATACGAATTTCTTTCTGATTTTGTTCCCGAGAAAGTGAAAGCCGAGGATGCACTAAGAGAGAGAAATTCAGGAGGGAACGGAGGAAGTTAG 885 0.4362 MASSKSEKTKKKAKTEEEEEGAAFKTEKKKKKTKTKTAEEEEEEEEEEAAAASKTEKKKKTKIAEEEEASKTEKKKKKTKTAEEKEAASKTEKKKKKTKTAEEETSKAVSKSRKEKEKENKKNNNSKKKKKLKLINGISKHHRDESLIVPSSSTESQQKQEEGTTVLANGEKPKKPKRKREKEEKEEEEEGDAKTHVFPMNRIRTMIKGEDPDLRVSQEAILAINKATEKFLEQFTQDAYVRCVQERRKSLSYKQLAHVVSKQRRYEFLSDFVPEKVKAEDALRERNSGGNGGS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2813 294 Coils Coil 109 131 - -
Dod03g2813 294 MobiDBLite consensus disorder prediction 1 202 - -
Dod03g2813 294 SUPERFAMILY Histone-fold 168 269 IPR009072 GO:0046982
Dod03g2813 294 Coils Coil 28 58 - -
Dod03g2813 294 MobiDBLite consensus disorder prediction 50 122 - -
Dod03g2813 294 Gene3D Histone, subunit A 153 275 IPR009072 GO:0046982
Dod03g2813 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 290 - -
Dod03g2813 294 MobiDBLite consensus disorder prediction 171 197 - -
Dod03g2813 294 MobiDBLite consensus disorder prediction 123 137 - -
Dod03g2813 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 61 290 - -
Dod03g2813 294 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 198 260 IPR003958 -
Dod03g2813 294 MobiDBLite consensus disorder prediction 1 39 - -
Dod03g2813 294 MobiDBLite consensus disorder prediction 149 165 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2813 185 257 CCAAT-HAP5 Transcription Factor Family AT1G07980 40.000 4.59e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dod03g2813 CBFD_NFYB_HMF 1.1e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2813 - - adu:107476944 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2813 03 60008393 60012842 Dod03g2813 03 60008393 60012842 ECH