Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2806 ATGAGTTCTGAGGAAAAGCCTGTGACTTTGGCTGAGGAAGAAGGACAACATGTTGATGATGATGCAGCTTCTTCTTGCAGAAGAACAGTTTCTCTACCAGCTCAAAAGGTTGATGATCCAGTGGGGATAACTGAAGAAACCACACATGTTCCTCTGCGGAAGCGGCAGAATCTTCTCTTAGAAATACCCTCAAGAACACCAAGAGAGTGCTCCCAAGATTTTGTGGCAATCAAAATGCCAATGACACCAAGTCCAACTCCCACCCCCAAGAGAGTGAATTTTCTCGTAACTTCTTGCTCGGTTGATGCTCCTATACATAATTCTCCCGGGCCTTCAACATCAAAGGGCAAATCATCCATAAGAAGCATCTTACCAAAATTGAGCTTCAGGTATCGGCCACAGTCAGATATTGAAAAGGGTACTAATGCAGCTCCAGAAGGTTCCTCTTCAGATCATCGCGAAAAGCCTTCAATCTCAAGATCATTGTCCCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCTGTAGAAGATATTGGACATTCAAACACCGAATCTGCTCATGGTGGTGGAAGTGTTGGTGGTCCTCTAAATAAAGGAGAGCCCCAGCGGAAGATTGCTCGCTCTCTTTCAGTGCCTGTCAACGACAAAGATAAAACCATACGGAGGATGGATTCGTTTTACCGCGTTATTCCTTCCACCCCTCGAGTAAAGAATGGAAATGATTCATTGACCACATCCCCAACAAAGGATACTGAAAATGATGATGATCATGATGATGGTGAAGATATACCTGAAGAAGACGCTGTGTGTAGAATTTGTTTGGATGATCTATGTGAAGGAGGTGAAACCTTCAAGTTGGAATGCAGCTGCAAAGGGGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGCAACAAGACCTGTGATGTATGCAAAGAGGATGTTCGAAACCTACCTGTCACTTTATTACGGATCCAAAGTGTTCGAAATCGGACTACTAGAGCAAGTACGTCGCAGCAGGAAGATGTTAATGGATACAGGGTTTGGCAAGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCGATTGCCATATCTCTTCCATTTTCCTGTGTGCTGGGCCTGCTCTCCTCCATGACATCATCGACTATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGCTTTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTCGCAACGTTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCTATTCTTGTGGAGTTTTACAGATGGAGAAGAAGATGGCAGCAGCAGCAAGTTCCTCAACTGATGACACAGCCTCGAACAGCAAACACACCGCGTCCAAGCCTGCCCAACCACAGCCAAACTGCAGCACAAAATCGACAGAACTCAAATCAGAGCTGA 1548 0.4464 MSSEEKPVTLAEEEGQHVDDDAASSCRRTVSLPAQKVDDPVGITEETTHVPLRKRQNLLLEIPSRTPRECSQDFVAIKMPMTPSPTPTPKRVNFLVTSCSVDAPIHNSPGPSTSKGKSSIRSILPKLSFRYRPQSDIEKGTNAAPEGSSSDHREKPSISRSLSLTKIFTPRIKRTSSLPVEDIGHSNTESAHGGGSVGGPLNKGEPQRKIARSLSVPVNDKDKTIRRMDSFYRVIPSTPRVKNGNDSLTTSPTKDTENDDDHDDGEDIPEEDAVCRICLDDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVRNLPVTLLRIQSVRNRTTRASTSQQEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRWQQQQVPQLMTQPRTANTPRPSLPNHSQTAAQNRQNSNQS* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2806 515 Pfam RING-variant domain 275 322 IPR011016 GO:0008270
Dod03g2806 515 MobiDBLite consensus disorder prediction 236 268 - -
Dod03g2806 515 MobiDBLite consensus disorder prediction 176 217 - -
Dod03g2806 515 PANTHER OS02G0165000 PROTEIN 41 500 - -
Dod03g2806 515 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 41 500 - -
Dod03g2806 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 330 IPR013083 -
Dod03g2806 515 MobiDBLite consensus disorder prediction 1 24 - -
Dod03g2806 515 ProSiteProfiles Zinc finger RING-CH-type profile. 267 329 IPR011016 GO:0008270
Dod03g2806 515 MobiDBLite consensus disorder prediction 481 515 - -
Dod03g2806 515 SUPERFAMILY RING/U-box 271 325 - -
Dod03g2806 515 SMART ringv_2 274 323 IPR011016 GO:0008270
Dod03g2806 515 CDD RING_CH-C4HC3_MARCH 275 323 - -
Dod03g2806 515 MobiDBLite consensus disorder prediction 1 44 - -
Dod03g2806 515 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2806 Dod-Chr3 59895473 59900631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2806 214 329 C3H Transcription Factor Family AT2G37950 35.043 1.41e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2806 - - gmx:100788108 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2806 03 59895473 59900631 Dod03g2806 03 59895473 59900631 ECH
Dod10g1624 10 37154777 37159268 Dod03g2806 03 59895473 59900631 PCT