Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2798 ATGCCGCCAAAGTTCGACCCCTCACAGGTCGTCGACGTGTTCGTCCGCGTCACCGGCGGCGAGGTCGGAGCCGCCTCCTCCCTCGCCCCAAAGATCGGCCCCCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCGAAGGAAACGGCCAAGGACTGGAAGGGCCTCCGCGTAACCGTCAAGCTAACCGTCCAGAACCGCCAGGCCAAAGTCGCCGTCGTCCCCTCCGCCGCCGCGCTCGTCATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGACCAAGAACATCAAGCACAACGGCAACATCTCGCTTGATGACGTCATCGAGATTGCGAGGGTGATGAGGCCTAGATCAATGGCGAAGGATCTCAGTGGAACAGTGAAGGAGATTCTCGGAACTTGCGTGTCTGTAGGGTGCACCGTGGACGGCAAGGATCCGAAGGATCTTCAGCAGGAAATCACCGATGGTGATGTTGAGTGTCATGTGATTGGGGATCGTTATTACACTAGTGAATATCCTTCGGAGTCTATTATTGCAATAGCTTATGTTGTGGAATTGGTTGTGGATAGTTTTGCTTTCGCCTCTCCGAGGTGA 603 0.5638 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVECHVIGDRYYTSEYPSESIIAIAYVVELVVDSFAFASPR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2798 200 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dod03g2798 200 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Dod03g2798 200 Gene3D - 1 81 IPR036796 -
Dod03g2798 200 Gene3D - 82 164 IPR036769 -
Dod03g2798 200 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Dod03g2798 200 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Dod03g2798 200 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 163 - -
Dod03g2798 200 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dod03g2798 200 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Dod03g2798 200 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dod03g2798 200 PANTHER 60S RIBOSOMAL PROTEIN L12 1 163 IPR000911 GO:0003735|GO:0005840|GO:0006412
Dod03g2798 200 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2798 Dod-Chr3 59840641 59841906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2798 1 162 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 90.123 3.29e-106 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2798 K02870 - pvy:116119751 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2798 03 59840641 59841906 Dod03g2798 03 59840641 59841906 ECH
Dod10g1614 10 37097124 37097901 Dod03g2798 03 59840641 59841906 ECH