Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2787 ATGAAGGAAGGTGAGAAGTGCATGGATGCGCAGCTATGGCACGCATGTGCTGGTGGAATGGTTCAGATCCCTCAGGTGAACTCCAAAGTTTTCTACTTCCCACAAGGGCACGCAGAACACGCTCAAACAAACATCGATCTCGCAACTTCCTCCATGAGGGTTCCACCACTCATCGCATGCAGGATCGCATCTGTGAAATTCATGGCAGACCCAGAAACAGACGAAGTCTTCGCCAAAATAAAGCTCATTCCACTCAAAAGCTCCGAGCTTGATGAGGAAAACGACACCGTTTTGGAGGGTGAAGCTTTGGAGAATCAAGAAAAGCCTGCATCTTTTGCGAAGACTCTGACTCAATCTGATGCTAACAATGGTGGTGGGTTCTCTGTTCCCCGGTACTGCGCCGAGACCATCTTTCCAAGGCTTGATTACTCGGCTGAACCGCCGGTTCAGACGGTGGTTGCAAAGGATGTTCATGGTGAGCTCTGGAAGTTCAGGCATATATATAGAGGGACACCAAGGAGGCACTTGCTTACAACTGGTTGGAGCACTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTCTTAGGGCTGAGAGTGGTGAACTTTGTGTTGGGATTAGGAGGGCAAAAAGGGGAATTGGTGGTGTTGGTGTTAGTGGAGGTGGAGGGTTTGAGGGTTCATCTGTGTGGAGCTCAGCTTCTTCAGGTAATAATGGGAATTGTGGTGGTGTTGGTGTTGGAGGGCATTTTGGGGCATTCACTTTTTTCATGAGAGAGGAGAACAAGAAGTTTTTGAGGAGTGGTTGTGTTGGTGGTGTTGGTGTTGGTAATTTGAGTGGAAGGTGTTGTTCTTCATCAAGGGTGAGGCATGAGGATGTTGTGGAGGCTGTGACACTTGCTGCAAGGAGCATGGCACTTGAGGTTGTTTATTACCCAAGGGCAAGCACTCCTGAGTTTTGTATTAAGGCTGCTTCTGTGAGGGATGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATCAGCTGGTTCATGGGGACTGTTTCTTCTGTTCAGGTTGTTGATCCTATAAGATGGCCTAATTCCCCTTGGCGAATTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACAAAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAATTGGTGTCAAACATGCCAGTCATCAATCTCGCACCCTTCTCTCCTCCGAGGAAGAAGCTGCGGTTTCCGCCGCACCCCGATTTCCCCCTTGATGCTCAGTTTCCGACGTTTTTGGGCAACCAGTATGGGCCCAACAGCCCCTTGTGTTGTTTATCCGACAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCTAAATGGAATATCTCTTTCAAATCTCCACCTTAACAATAAACTGCAGTTAGGGCTGCTTCCAAGTAATATCAATAAGCTTGATGTTCATAGTGGGATTTCAAACGGCAACGTGATCAACCACAATAAGAGCAAAGAGAGCTTATCATGCTTGCTGACCATGGGGAAATCTAGCAAGAGTTTGGAGAAATCTGATAATGTTAAGGGACACCAGTTTTTGCTTTTTGGCCAACCAATTCTGACTGAGCAACAAATCTCTAGAAGCTGTGCTAGAGATTTGTTATCTCCTAACTGTTTTAAAAGAAAAGATTCACCAGATGAGAACAAGGACACAGAAAAGTGCTTTCTGGGTGATTCTCAATCTGAACTTTCACAGCACTTTCCACCACGAAAAGCTTCTAGCAGCTGA 1815 0.4694 MKEGEKCMDAQLWHACAGGMVQIPQVNSKVFYFPQGHAEHAQTNIDLATSSMRVPPLIACRIASVKFMADPETDEVFAKIKLIPLKSSELDEENDTVLEGEALENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAESGELCVGIRRAKRGIGGVGVSGGGGFEGSSVWSSASSGNNGNCGGVGVGGHFGAFTFFMREENKKFLRSGCVGGVGVGNLSGRCCSSSRVRHEDVVEAVTLAARSMALEVVYYPRASTPEFCIKAASVRDAMRIQWCSGMRFKMPFETEDSSRISWFMGTVSSVQVVDPIRWPNSPWRILQVTWDEPDLLQNVKRVSPWLVELVSNMPVINLAPFSPPRKKLRFPPHPDFPLDAQFPTFLGNQYGPNSPLCCLSDNAPAGIQGARHALNGISLSNLHLNNKLQLGLLPSNINKLDVHSGISNGNVINHNKSKESLSCLLTMGKSSKSLEKSDNVKGHQFLLFGQPILTEQQISRSCARDLLSPNCFKRKDSPDENKDTEKCFLGDSQSELSQHFPPRKASSS* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2787 604 MobiDBLite consensus disorder prediction 586 604 - -
Dod03g2787 604 SMART B3_2 112 214 IPR003340 GO:0003677
Dod03g2787 604 SUPERFAMILY DNA-binding pseudobarrel domain 105 215 IPR015300 -
Dod03g2787 604 Pfam Auxin response factor 300 383 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod03g2787 604 Gene3D - 337 410 - -
Dod03g2787 604 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Dod03g2787 604 CDD B3_DNA 111 212 IPR003340 GO:0003677
Dod03g2787 604 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 603 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod03g2787 604 MobiDBLite consensus disorder prediction 569 585 - -
Dod03g2787 604 Gene3D - 110 214 IPR015300 -
Dod03g2787 604 PANTHER AUXIN RESPONSE FACTOR 2 603 - -
Dod03g2787 604 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Dod03g2787 604 MobiDBLite consensus disorder prediction 569 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2787 Dod-Chr3 59716784 59719986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2787 3 554 B3 DNA Binding Superfamily AT2G28350 59.897 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod03g2787 B3 3.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2787 - - gmx:100814686 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2787 03 59716784 59719986 Dod03g2787 03 59716784 59719986 ECH
Dod10g1607 10 37011174 37015247 Dod03g2787 03 59716784 59719986 ECH
Dod10g1607 10 37011174 37015247 Dod03g2787 03 59716784 59719986 PCT