Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2750 ATGTCTCACCAGGGCGAATCATCTGACTCGAAATCGGGGAACAAGGACTTCTTGACCGCGATTCTCGAACGGAAGAAGTCGCCGAACCGATTGGTGGTCGATGAGGACGTCAACGATGACAACTCCGTAGTGTCCATGCACCCACAAACCATGCAAAAGCTCCAACTTTTACGCGGCGACACTATTCTCATCAAGGGAAAGAAAAGGAGGGACACAATTTGCATTGCTCTTGCTGATGAGACTTGTGAGGAGCCCAGGATCAGGATGAACAAGGTTGTGAGGTCTAATTTGAGGGTTCGCCTTGGTGATGTTGTGTCTGTGCACCAGTGCCCGGATGTCAGGTATGGGAAGCGTGTCCACATTCTGCCTATTCATGATACCATTGAAGGCGTCACCAGCAACCTGTTTGATGCTTACTTGAAACCTTATTTCTTGGAGGCTTTTCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATCGAAACTGATCCTGGGGAGTATTGCGTGGTTGCTCCAGACACTGAAATCTTCTGTGAGGGGTATCCTGTGAAAAGGGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGATGTGGGCGGTGTCAGGAAGCAAATGGCGCAGATTCGTGAGTTAGTTGAGCTTCCACTGAGACATCCACAACTTTTTAAGTCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTTTATGGACCTCCAGGCTCTGGTAAGACACTAATAGCAAGAGCTGTCGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATCATGTCCAAACTAGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCCCCGGCCATCATCTTTATTGATGAGATAGATTCTATTGCACCCAAGCGTGAGAAGACACATGGTGAAGTTGAAAGAAGGATTGTTTCGCAACTCTTGACTCTTATGGACGGATTAAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGAGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCACATACATACCAAAAACATGAAGCTTGCTGATGAAGTTGACTTGGAGAGAATTGCAAAAGATACTCATGGGTATGTTGTTGCTGACCTTGCTGCTCTTTGCACTGAAGCTGCTCTGCAATGCATTATGGAGAAAATAGATGTCATTGACTTGGAAGATGAGACTATTGTTGCTGAAGTACTGAATTCTATGGCAGTTACAATTGAGCACTTCCAGACTGCACTGGGAACAATCAATCCTTCGGCTCTACGTGAAACTGTTGTCGAGGTGCCTAATGTCAGTTGGGATGATATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTCGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTGGCCAAAGCAATTGCTAACGAATGTCAAGCCAACTTTATCAGTGTGAAAGGCCCAGAATTGCTTACTATGTGGTTTGGTGAAAGTGAAGCGAATGTTCGGGAAATCTTTGACAAGGCCAGACTATCTGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAAACTGTGTTCATAATTGGGGCAACCAACAGACCAGACATCATTGACCCAGCACTTCTTAGGCCAGGCCGTCTGGATCAGTTGATCTATATTCCTCTTCCTGATGAGGAGTCCCGTTATCAAATCTTCAAGGCCTGCATGAGGAAGTCTCCTGTCTCGAAAGACGTTGATTTGAGAGCACTAGCTAAGTACACTCAAGGCTTCAGTGGTGCTGATATAACGGAGATATGCCAGCGAGCATGCAAATATGCTGTAAGAGAGAATATAGAAAAGGGCATCGAACGAGAGAGGAAGAGGAGAGAAAACCCTCAAGCCATGGACGAAGACGATGTTGCTGAGTTCAAAGCTGCTCATTTTGAAGAGTCGATGGAGTATGCACGTAGGAGCGTGAGCGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTGCAGGGATTGACAATTAATCAGGATTCCCCACCCAAGAGAAGAAAAATGGTGGGCACCATAGCAATTTTCCTTTTTTCTTTTTTCCTTTGTTTTATGTTCATCCTGTCGTCCATAACCCGTGAACCGGTAATGAAATCAGTCTGA 2433 0.4505 MSHQGESSDSKSGNKDFLTAILERKKSPNRLVVDEDVNDDNSVVSMHPQTMQKLQLLRGDTILIKGKKRRDTICIALADETCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVRYGKRVHILPIHDTIEGVTSNLFDAYLKPYFLEAFRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGYPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLHIHTKNMKLADEVDLERIAKDTHGYVVADLAALCTEAALQCIMEKIDVIDLEDETIVAEVLNSMAVTIEHFQTALGTINPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARLSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKACMRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAVRENIEKGIERERKRRENPQAMDEDDVAEFKAAHFEESMEYARRSVSDADIRKYQAFAQTLQGLTINQDSPPKRRKMVGTIAIFLFSFFLCFMFILSSITREPVMKSV* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2750 810 Gene3D - 113 209 - -
Dod03g2750 810 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Dod03g2750 810 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Dod03g2750 810 SMART CDC48_2_2 130 196 IPR004201 -
Dod03g2750 810 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 41 764 IPR005938 GO:0016787
Dod03g2750 810 PANTHER AAA-FAMILY ATPASE 5 765 - -
Dod03g2750 810 Gene3D - 7 112 - -
Dod03g2750 810 SMART AAA_5 241 377 IPR003593 -
Dod03g2750 810 SMART AAA_5 514 653 IPR003593 -
Dod03g2750 810 Gene3D - 655 760 - -
Dod03g2750 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 761 IPR027417 -
Dod03g2750 810 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Dod03g2750 810 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Dod03g2750 810 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Dod03g2750 810 SUPERFAMILY ADC-like 26 110 IPR009010 -
Dod03g2750 810 Gene3D - 468 651 IPR027417 -
Dod03g2750 810 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Dod03g2750 810 Pfam AAA+ lid domain 398 439 IPR041569 -
Dod03g2750 810 Pfam AAA+ lid domain 673 714 IPR041569 -
Dod03g2750 810 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 111 IPR003338 -
Dod03g2750 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 467 IPR027417 -
Dod03g2750 810 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 765 - -
Dod03g2750 810 CDD AAA 484 651 - -
Dod03g2750 810 SMART CDC48_N_2 30 113 IPR003338 -
Dod03g2750 810 CDD AAA 211 374 - -
Dod03g2750 810 Gene3D - 210 374 IPR027417 -
Dod03g2750 810 Gene3D - 376 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2750 Dod-Chr3 59210112 59215866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2750 510 709 Calmodulin-binding Proteins AT3G56690 41.379 3.94e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2750 K13525 - gmx:547850 1405.96