Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2724 ATGTCCAAACCACCCTCCGCCTTCGATGCCCTCATGTCCGGCGCCCGGGCCGCCGCTGCCAATGCCAAGAAGAAATCCCAACCCCCTTCCTCTTCTCCCAAGAAACGGAAGTCCCCCTCCCCGTCCCCGCCCTCAACCACCACCACCACCACTCCCACTTCAACCCTAAACCCTAACAACAATCTCGAACCCTCCGAAATCCTTCAACCGGAATCGGGCAACGGAGCTGCTCCTCCGCCGAGCAAGGTTCGCCACGTGTCATCGTCCTCCTCGCAGGAGAAGGTGGCGGAGCTGAAGAAGCGCGTCCCGGAGCTGAAGAAGAAGCCCCCGGATTTCAAACCTAGCAGTGTGGCTACCTGGGAGAAGGGCGAGCCGGTGCCATTTCTGTTCCTCTCCTTGGCGTTCGACATGATTGCGGAGGAGTCAGGGAGGATCCTGATTACGGATATTGTTTGCAATTTGTTGAGGACTGTGATTTACGCTACTCCTGACGATCTTGTGCCCGTTGTTTATCTATCCGCTAATAGGATTGCTCCGGCACATGAAGGATTGGAATTGGGAATTGGCGATGCTTCCATTATTAAGGCGCTTGCTGAGGCATGTGGAAGGACTGAAGCACAAATCAAGAATCAGTATAAGGAAAAAGGTGACTTAGGCTTAGTTGCCAAAGCAAGCCGGTCATCCCAGTCTATGATGCGGAAGCCTGATGCCTTAACTATCCGGAAGGTTTTCAACACTTTCCGACTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTTATCCGATTGCTACAGACAAAGTTGCGAATTGGGTATGCCGAGCAAACTCTCTTATCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCTAATCCACCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTTCGAAGATTGTCAAACAAGTTTATTCTGTTCTTCCTGATTATGACAAAATAGTATCTGCACTGCTAACGGATGGTGTATGGAAACTTCCAAAGACCTGTAATTTTACTCCTGGCATTCCAGTTGGACCTATGCTTTCGAAAGCAACCAAGGGTGTGTCTGAAGTTCTCAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGGGAGCGAGCCCAGATACATTACATGGAGAATGGTTCTGTTGAGATTTATAGTAGAAATGCAGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGGTAAGGAAATCAACTGTATCATCATTTGTTCTTGATTGCGAACTTGTTGCATATGATCGAGGAAAGCAGAAAATCCTTCCTTTCCAGGTTCTTAGTACTCGGGCTCGCAAAAATGTATCTATGGGTGATATAAAGGTTGATGTTTGCATATTTGCTTTTGATTTGCTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAAAGTCCGTAGAGAGCATCTCTATGCCTCTTTCGAGGAAGAATCTGGTTTTTTTCAGTTTGCTACAGCAATAACATCAAATGATGTTGAGGAAATACAGAAGTTCCTTGACAAAGCTGTTGATGCAAGTTGTGAGGGCTTAATTATTAAAACATTAAATGAAGATGCTACATATGAACCTTCCAAGCGCTCACTCAACTGGCTAAAATTGAAGAAAGATTATCTGGAAAATATAGGGGACTCACTTGATTTGGTACCTATAGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTCTACGGTGCCTTTCTCCTTGCTTGCTACGACAACGATAATGAAGAGTTTCAAAGTATTTGTAAGATAGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCAGTTCACCGTGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTTCCACGTCTACTTCGAGTTCGACCTGACAAAGCTCCTGAACAAGCCTCAACATCTGAATTGGTTGCTGACATGTATAATGCTCAAAAACACACTCAAAAGAACAACCAAGATGACAATGAAGATGATTGA 2133 0.4515 MSKPPSAFDALMSGARAAAANAKKKSQPPSSSPKKRKSPSPSPPSTTTTTTPTSTLNPNNNLEPSEILQPESGNGAAPPPSKVRHVSSSSSQEKVAELKKRVPELKKKPPDFKPSSVATWEKGEPVPFLFLSLAFDMIAEESGRILITDIVCNLLRTVIYATPDDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPQYLIRLLQTKLRIGYAEQTLLSALGQAAVYTEEHSNPPPEIQSPLEEASKIVKQVYSVLPDYDKIVSALLTDGVWKLPKTCNFTPGIPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRVRKSTVSSFVLDCELVAYDRGKQKILPFQVLSTRARKNVSMGDIKVDVCIFAFDLLYLNGQALLQENLKVRREHLYASFEEESGFFQFATAITSNDVEEIQKFLDKAVDASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLLRVRPDKAPEQASTSELVADMYNAQKHTQKNNQDDNEDD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2724 710 MobiDBLite consensus disorder prediction 94 111 - -
Dod03g2724 710 ProSiteProfiles ATP-dependent DNA ligase family profile. 475 611 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod03g2724 710 SUPERFAMILY Nucleic acid-binding proteins 581 696 IPR012340 -
Dod03g2724 710 Gene3D - 578 625 IPR012340 -
Dod03g2724 710 Gene3D - 626 709 IPR012340 -
Dod03g2724 710 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 393 401 IPR016059 GO:0003909
Dod03g2724 710 Gene3D - 379 577 - -
Dod03g2724 710 Coils Coil 88 108 - -
Dod03g2724 710 Pfam DNA ligase N terminus 127 302 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod03g2724 710 MobiDBLite consensus disorder prediction 41 68 - -
Dod03g2724 710 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 625 710 - -
Dod03g2724 710 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 23 625 - -
Dod03g2724 710 ProSitePatterns ATP-dependent DNA ligase signature 2. 547 573 IPR016059 GO:0003909
Dod03g2724 710 CDD Adenylation_DNA_ligase_I_Euk 358 576 - -
Dod03g2724 710 Pfam ATP dependent DNA ligase C terminal region 627 678 IPR012309 GO:0003910|GO:0006281|GO:0006310
Dod03g2724 710 PANTHER DNA LIGASE 1 625 710 - -
Dod03g2724 710 PANTHER DNA LIGASE 1 23 625 - -
Dod03g2724 710 Gene3D DNA ligase/mRNA capping enzyme 398 523 - -
Dod03g2724 710 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 361 579 - -
Dod03g2724 710 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 185 623 IPR000977 GO:0003910|GO:0005524|GO:0071897
Dod03g2724 710 CDD OBF_DNA_ligase_I 581 695 - -
Dod03g2724 710 MobiDBLite consensus disorder prediction 1 118 - -
Dod03g2724 710 Pfam ATP dependent DNA ligase domain 369 573 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Dod03g2724 710 Gene3D - 104 371 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Dod03g2724 710 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 110 360 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2724 Dod-Chr3 58905949 58915398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2724 2 710 Core DNA Replication Machinery Family AT1G08130 65.364 0.0 990
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2724 K10747 - gmx:100783155 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2724 03 58905949 58915398 Dod03g2724 03 58905949 58915398 ECH