Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2722 ATGGAAACCAAGGCTGCGGTTGTTTCATCTCTTCCTCACATGTCACACTCTTCTGAATCCAGCTCCAAAGACGTTTCTCCTATGGAACTTGGAATTGAGAATTTCGGCTGCAAGCATTACAGAAGGAGATGCAAGATTAGAGCACCATGTTGTGATGAGGTTTTTGACTGTAGACATTGCCATAACGAAGCTAAGAATTCTGAGGAGATTAGTCTTCAGGATCGTCATGATATCCCACGCCATGAAATTAAGAAGGTTCAACAGTATTGCAAAAACTGTGGGGTATGCATGGGCAAGTACTTTTGTGCTACATGCAAATTCTTCGATGATGATATTTCAAAGAACCAATACCACTGTGAAGAATGTGGCATATGCAGAACTGGAGGCAAGGATAACTTTTTCCATTGTAAGAGATGTGGATGTTGCTACTCTAAGTTAATGGAGGCAGGGCATCGCTGTGTGGAAAGAGCAATGCATGACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACGTTAAGAGATATTACCGTCTTGCCTTGTGGCCATACAATACATTTAGACTGTGTTAAAGAGATGGGAAAACATCATAGGTACTCATGTCCCGTTTGCTCAAAATCCATCTGTGACATGTCCAGCATGTGGAAGAAGCTTGACCAAGTGGTATGTGAATGA 675 0.4163 METKAAVVSSLPHMSHSSESSSKDVSPMELGIENFGCKHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEISLQDRHDIPRHEIKKVQQYCKNCGVCMGKYFCATCKFFDDDISKNQYHCEECGICRTGGKDNFFHCKRCGCCYSKLMEAGHRCVERAMHDNCPVCFEYLFDTLRDITVLPCGHTIHLDCVKEMGKHHRYSCPVCSKSICDMSSMWKKLDQVVCE* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2722 224 MobiDBLite consensus disorder prediction 10 25 - -
Dod03g2722 224 ProSiteProfiles Zinc finger CTCHY-type profile. 97 161 IPR017921 -
Dod03g2722 224 SUPERFAMILY RING/U-box 161 210 - -
Dod03g2722 224 MobiDBLite consensus disorder prediction 1 25 - -
Dod03g2722 224 SMART ring_2 162 204 IPR001841 -
Dod03g2722 224 SUPERFAMILY Zinc hairpin stack 98 155 IPR037275 -
Dod03g2722 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 217 IPR013083 -
Dod03g2722 224 ProSiteProfiles Zinc finger CHY-type profile. 30 124 IPR008913 GO:0008270
Dod03g2722 224 Pfam RING-type zinc-finger 162 202 IPR027370 -
Dod03g2722 224 SUPERFAMILY CHY zinc finger-like 34 106 IPR037274 GO:0008270
Dod03g2722 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 18 222 - -
Dod03g2722 224 Pfam CHY zinc finger 37 107 IPR008913 GO:0008270
Dod03g2722 224 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 18 222 - -
Dod03g2722 224 ProSiteProfiles Zinc finger RING-type profile. 162 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2722 Dod-Chr3 58868135 58871016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2722 35 223 C2H2 Transcription Factor Family AT3G18290 36.893 3.48e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2722 K10144 - gmx:100812709 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2722 03 58868135 58871016 Dod03g2722 03 58868135 58871016 ECH