Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2718 ATGGGTACCGCTAGTGCTGCCACCACCAACAAAGTTGGTTTCTATATTTATGAGTGCAAAACTTGTAACCGAACCTTCCCTTCTTTCCAAGCGTTGGGCGGGCACAGGGCAAGTCACAAAAAGCCCAGGTTGATGGCCGAGGAGAAGAAACCGCCACCACCAGCAACACTAGCACCATCGTCACCGCCACCGCCGTTGGGGCCGCAAGTGATGAACACAAATTATGATCACCATCAATTTGAATTAGGAGGAGGTGGAGGGCAACAACCCCACACCAAAAGCGTCCCTGCTCCAATTAATCCAATTTCTCTTCAATCTGGGAGTGCTCACAAGGCTAATTTCAATGGCAACAATAACAAGGCCAAGATTCACGAGTGCTCCATATGTGGCTCGGAATTCACATCAGGCCAAGCATTGGGTGGACACATGAGGAGGCATAGGGCGTCCACAAACACCAGCACTCAGCCCATGAGCGGCATTGAGACAACTTGTAACGTTACGGCGGTGGCTGACGCGGCCACCGTAACGGTAGAAGTTCAGCCCCGGAACATTCTAGAATTGGATCTCAACCTTCCGGCGCCGGAGGAGGACCTCCGGGAGCCAAAGTTTCAATTCACTGCGGCAACTCAGAAGTCCATGGTTCTTTCAGCTACTCCGGCTTTGGTGGATTGCCATTATTAG 681 0.5169 MGTASAATTNKVGFYIYECKTCNRTFPSFQALGGHRASHKKPRLMAEEKKPPPPATLAPSSPPPPLGPQVMNTNYDHHQFELGGGGGQQPHTKSVPAPINPISLQSGSAHKANFNGNNNKAKIHECSICGSEFTSGQALGGHMRRHRASTNTSTQPMSGIETTCNVTAVADAATVTVEVQPRNILELDLNLPAPEEDLREPKFQFTAATQKSMVLSATPALVDCHY* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2718 226 Gene3D Classic Zinc Finger 106 178 - -
Dod03g2718 226 MobiDBLite consensus disorder prediction 52 69 - -
Dod03g2718 226 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Dod03g2718 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 44 IPR013087 -
Dod03g2718 226 MobiDBLite consensus disorder prediction 33 69 - -
Dod03g2718 226 ProSitePatterns Zinc finger C2H2 type domain signature. 19 39 IPR013087 -
Dod03g2718 226 SMART c2h2final6 124 146 IPR013087 -
Dod03g2718 226 SMART c2h2final6 17 39 IPR013087 -
Dod03g2718 226 PANTHER ZINC FINGER PROTEIN ZAT5 6 226 - -
Dod03g2718 226 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 6 226 - -
Dod03g2718 226 Pfam C2H2-type zinc finger 17 42 - -
Dod03g2718 226 Pfam C2H2-type zinc finger 124 148 - -
Dod03g2718 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Dod03g2718 226 SUPERFAMILY beta-beta-alpha zinc fingers 16 146 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2718 Dod-Chr3 58818313 58818993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2718 14 226 C2H2 Transcription Factor Family AT2G28200 47.489 2.97e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2718 zf-C2H2_6 1.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2718 - - aip:107629278 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2718 03 58818313 58818993 Dod03g2718 03 58818313 58818993 ECH
Dod03g2718 03 58818313 58818993 Dod06g1212 06 16222368 16223549 ECH
Dod10g1562 10 36322445 36323781 Dod03g2718 03 58818313 58818993 ECH
Dod01g2777 01 67634484 67635655 Dod03g2718 03 58818313 58818993 ECH
Dod07g0126 07 1508882 1510134 Dod03g2718 03 58818313 58818993 ECH
Dod10g1562 10 36322445 36323781 Dod03g2718 03 58818313 58818993 PCT