Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2716 ATGTCGAAGGCCACATCTGGCTTCCCAAATAATATCCCTCAGCACATGTTCCCACCTATGACAGAACACTCGGTTCCACCCTCATCAGTTGTTAAACTAAACTCTGGCTCAGGATCATCATCTTCATCACACTCCAGCTCCTCATCATCCCTTCTCTACCATCTTTCAATTCTTAAGGAAAAGCTTAGTCAGGTGCAGACCCTGGTTGGTGTTCTAGCCTCCCCTGAACAAAGCCTACCCGATCAGTCAACGTCCATGGTCATATCCAGCATAAACTCCGCAATCCAGGAAATCATAGTTGCTGCCACTTCAATGAGGCTCACCTGCCAAAACATGACGGCTCTTGGTTCAATACAAGGTACTACTACTACTATTACCATTTGCAACGAAGAATTGCACCCCTACCAACCACAATCTCATCATGATCATGATAGGTTGTTATTACCACATCAATTAAACTTTGGCAATAATAACTTTGGAGTTGGGCTTAATAACAGTAACAACATAGGCCAAGATATTATTAGAGGTCAAAGCTTCTTTTCTAGTACCGAGTCAGGAGGGTTGGATTATTGGTTTGCGGAAAGCTATACCAATAATAATAACAACAACAACAACAATAGTACTAATAGCCCTAAGGATGATAATGGGTGCGGTGGAGTAAGTGATGAAGCTAGGGGAAGATTAATGTCTCGATTAGGGGATGATGATGAAACGGATATAATTGAATTGGATGCTGCTGATTTGTTGGCAAGGTACACACATTTTTGCCAAGTTTGTGGGAAAGGGTTTAAGCGCGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAATACAAGACTAGTGCAGCCTTGAAAAATAATAAGGGGAGGTTGTTATTGGGGGGTGGCAGTGGTGGTGGTGGAGGGTGTGGCATTTTGGTCGTGAATAGTTGTAGTGTGAGGCCGAAGAAGTATTCGTGCCCTCAAGCAGGGTGCAGGTGGAACAAGAATCATGTGAGGTTCCAGCCATTGAAGTCAATGGTTTGTGTGAAGAATCACTACAAGAGGAGCCACTGCCCAAAGATGTACGTGTGCAAGAGGTGTAACCAGAAGCAGTTCTCGGTGCTATCTGATTTGAGGACACATGAGAAGCACTGCGGGGACCCCAAGTGGCGGTGCTCCTGTGGCACCACGTTCTCCAGGAAGGACAAGCTCATGGGCCATGTTGCTTTGTTTGTTGGGCACACCCCAGCTATTAGCAGTGGCTTGTCACACTCGGGAAGATCATCAGAACAGCAGGCATTGCGGCAGCAGATGATTGATGGTGGTTCAGGATAA 1323 0.458 MSKATSGFPNNIPQHMFPPMTEHSVPPSSVVKLNSGSGSSSSSHSSSSSSLLYHLSILKEKLSQVQTLVGVLASPEQSLPDQSTSMVISSINSAIQEIIVAATSMRLTCQNMTALGSIQGTTTTITICNEELHPYQPQSHHDHDRLLLPHQLNFGNNNFGVGLNNSNNIGQDIIRGQSFFSSTESGGLDYWFAESYTNNNNNNNNNSTNSPKDDNGCGGVSDEARGRLMSRLGDDDETDIIELDAADLLARYTHFCQVCGKGFKRDANLRMHMRAHGDEYKTSAALKNNKGRLLLGGGSGGGGGCGILVVNSCSVRPKKYSCPQAGCRWNKNHVRFQPLKSMVCVKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDPKWRCSCGTTFSRKDKLMGHVALFVGHTPAISSGLSHSGRSSEQQALRQQMIDGGSG* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2716 440 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Dod03g2716 440 Gene3D Classic Zinc Finger 250 295 - -
Dod03g2716 440 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 35 421 IPR044300 GO:0010044|GO:0010447
Dod03g2716 440 MobiDBLite consensus disorder prediction 1 47 - -
Dod03g2716 440 MobiDBLite consensus disorder prediction 27 47 - -
Dod03g2716 440 PANTHER OS08G0562300 PROTEIN 35 421 - -
Dod03g2716 440 Gene3D Classic Zinc Finger 356 406 - -
Dod03g2716 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Dod03g2716 440 SMART c2h2final6 358 380 IPR013087 -
Dod03g2716 440 SMART c2h2final6 320 353 IPR013087 -
Dod03g2716 440 SMART c2h2final6 254 276 IPR013087 -
Dod03g2716 440 SUPERFAMILY beta-beta-alpha zinc fingers 253 279 IPR036236 -
Dod03g2716 440 MobiDBLite consensus disorder prediction 201 215 - -
Dod03g2716 440 MobiDBLite consensus disorder prediction 201 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2716 Dod-Chr3 58800771 58802093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2716 37 413 C2H2 Transcription Factor Family AT5G22890 44.211 1.22e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2716 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2716 - - gmx:100803120 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2716 03 58800771 58802093 Dod03g2716 03 58800771 58802093 ECH
Dod10g1561 10 36309916 36310710 Dod03g2716 03 58800771 58802093 PCT