Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2710 ATGGCTATTGCTGGTCTGCACAATGTATCTGTACTTGACTCTTCTTTCCTGAGGGACTCCCATTCTCAGTCATCCAGAAGGCGAGGAGATGGAAGAAGGGGCGGCACCCGGTCATCTGCACTGTTGCAAATGTGGCGAGAACTCGAGGATGAACATATGGTGAATAGGCCTGGTGAAGTACTACTTGAACAGAGGAGTACTGATGGGTTGATTTCTGACCTCTCACAAGCAGGTTCACCAGGTAGCCATGAGAGAGGACATCGGCGTATTATAGAAGATGCAGTTTTGGGTGACTTGGAGTCTGAAACATGGTCACAGTCACAGAGTCAGCATGAATCCCATGATGATCATGAGGATTTTAACAATTCTAGCTGCGAAACCTCCTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTTAGGGAATGGATGAATAGTGGTGCTAGGGATCATGGATCAAACATTTCCAGGAGAAATAACAATTCAAGGGGAGAATGGCTTGGTGAAACTGAGCAGGAAAGGGTGAGAATCATAAGGGAGTGGGTACAAATGAGTAGCCAACAGGCCCAGCAGAGAGGCGTTTCTTCTGGGGAAAGCAGGGAAGAGCAATCTGCTGAAATTGATACACAAATCGAACGTGTTCGCGATGGATTTGTTGTTAACCAGAGTGAGGGCCGGACTGAACATATACGCAGGGGTATCCGTAAATTATGTGGCCGACAGGCTATGCTTGATATGCTGAAGAAGGCTGAAAGGGAAAGGCAAAGAGAAATTCAGGAGTTGTTGGACCATCGTGCAGTATCTCATTTCCCCCATCGTAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCTGTTGATAACAGCAGGTCCGCTTCTGTTGCTGAAAGTGAATTAGGCTTATTGAGGCAAAGACAAACTGTATCAGGCCTAAGGGAAGGATTCTTCTCTGGAAAGGACAAAACTGGTTGCAGTCAAGTAACCAGCAGCAACCTATCTGATACCTCGTCTAACAATGATATTGAATTTAATACAAATGAACAAACTGGAGCCAGCAGTTCACACATGGTCCCAACTGTACATTCTGAACAGTCTGAACCTAATAACAGAGGAAATGGTGGACTTTGGATATCAGGTGGCCAGAAATGTTCGCAGGAGACCACATGTGAGAATCTAGATTGCCAAGATTCTACTGCTCATGTTGACTCAGTAGAATTGCAATCACCATTCGGTGTTGTTGTTGAAAGAAGAGACGGCACTGGGCAAAATGTTGATGTGATCCCAGTTGAAGATACTGCTAGTGAACTGATGCAACAAATTTTGCAAACTGAAGCTTCAGAGCATAGCACTATGCAGGAATTCAGTGAGGCATATAATGATCAATCTCACTTGGGTGACATAACTAACGGTGAAAACAATTCATCAAACCACAACAATCGTTCAGAGGACAACGTTGTTGATGATGTGAATTGGAATGAATCTGCTGCTCCAGAAGGAGAACAGCTGGAAGAAGTTATTGAACATGAAGGAAATGACTGGCATCAGAGTAACAGTGAATGGAGAAATAGCACCGATGAAAGTGTGGATGATAATCAGCTCAGTAGTACAGCGATTGAGTGGCCTGATAACAGTTTGGGAAATGAGGATGGAGAAAACTCTCGTCTGCAAGAAGGTCCTGAAGTGTGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTAGAAAATTGGTTGGGAGGACCTTCTGATCTTGAAAGTGCTCCTGTTGGTAGAATTCACGGTTTTTATTTTCCTGATGATGACAATGTATATAGTGTTGAACTCAGGGAACTGCTTAATAGAAGAAGCGTCTCTAACCTCCTTCGGAGCAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCTTATGTTGAAAGGCAGGGTCATGCGCAGATTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCTGCTTCTGTAGAACAGGACCTTGAGCAAGAGAGGAGGGATCAGATTGTCAGTCAGGAGGGTACTGTTAATAGTCCACTTGATCTACCCTCCTCTTTACCTGTACCTCCTCCTCTGCCTCTTTGGGACCAACACCCTCACCGTGACAGCTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGGTTATTAATGACTTGAGAATTGACATGGCTAGACTACAGCAAAGGATGAATAACATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAGCTGGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCTGCCTTGAATCGTTCGGTTGGTTCATCAGGAACCAATGACTGTGAGTCGCCAGATGATAAATCTAAATGGGAATGTGTGAGGAAAGGGCTTTGCTGTATATGCTGTGAGAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGTACATGTTCAAAGTGTGCCAATGAGTTGCTTCAATGTAGAAGGAAGTGTCCAATGTGTCAAGCACCCGTGGTGGAGGTGATACGTGCTTATTCTATACTATAA 2562 0.4446 MAIAGLHNVSVLDSSFLRDSHSQSSRRRGDGRRGGTRSSALLQMWRELEDEHMVNRPGEVLLEQRSTDGLISDLSQAGSPGSHERGHRRIIEDAVLGDLESETWSQSQSQHESHDDHEDFNNSSCETSSDLGEVERERVRQIFREWMNSGARDHGSNISRRNNNSRGEWLGETEQERVRIIREWVQMSSQQAQQRGVSSGESREEQSAEIDTQIERVRDGFVVNQSEGRTEHIRRGIRKLCGRQAMLDMLKKAERERQREIQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSVDNSRSASVAESELGLLRQRQTVSGLREGFFSGKDKTGCSQVTSSNLSDTSSNNDIEFNTNEQTGASSSHMVPTVHSEQSEPNNRGNGGLWISGGQKCSQETTCENLDCQDSTAHVDSVELQSPFGVVVERRDGTGQNVDVIPVEDTASELMQQILQTEASEHSTMQEFSEAYNDQSHLGDITNGENNSSNHNNRSEDNVVDDVNWNESAAPEGEQLEEVIEHEGNDWHQSNSEWRNSTDESVDDNQLSSTAIEWPDNSLGNEDGENSRLQEGPEVWQEDGGFQEAVENWLGGPSDLESAPVGRIHGFYFPDDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAQIEWELQETTPSSASVEQDLEQERRDQIVSQEGTVNSPLDLPSSLPVPPPLPLWDQHPHRDSWSQNDINNQRLGIDWEVINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSVGSSGTNDCESPDDKSKWECVRKGLCCICCESNIDSLLYRCGHLCTCSKCANELLQCRRKCPMCQAPVVEVIRAYSIL* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2710 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Dod03g2710 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 851 IPR013083 -
Dod03g2710 853 MobiDBLite consensus disorder prediction 109 123 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 524 559 - -
Dod03g2710 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 852 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 100 134 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 20 34 - -
Dod03g2710 853 SUPERFAMILY RING/U-box 800 846 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 470 494 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 518 562 - -
Dod03g2710 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Dod03g2710 853 Coils Coil 243 270 - -
Dod03g2710 853 PANTHER PROTEIN, PUTATIVE-RELATED 1 852 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 17 37 - -
Dod03g2710 853 Coils Coil 729 756 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 334 378 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 653 673 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 470 488 - -
Dod03g2710 853 CDD mRING-HC-C3HC5_NEU1 801 839 - -
Dod03g2710 853 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2710 Dod-Chr3 58729829 58735219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2710 801 847 C3H Transcription Factor Family AT3G06140 42.553 4.79e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2710 - - gmx:100801329 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2710 03 58729829 58735219 Dod03g2710 03 58729829 58735219 ECH
Dod10g1553 10 36259699 36266207 Dod03g2710 03 58729829 58735219 ECH
Dod10g1553 10 36259699 36266207 Dod03g2710 03 58729829 58735219 PCT