Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2709 ATGGAACTCCACAATCGCAGACTCCTCCTTCTCAACGAGGATGTCCCCATCAACAGCGAACCACCACCACCACCATCATCATCAATGTTCAGTACCAATTTGCAACTACCTCCTCGTCCCATTTTCACATCACACCTCGCCTACGTCTTCCTCATCCTCTTCACAACCGTCTTCTTCCTCGGCTTCGTCCTCCTTTACATCCGACACTTCTCCAGCGACTCCGACGCCTTCCGCAGCCGCATCTACCGCCGCAACAGTTCCTCCGGCGACGCCGCCGATAATCCTCTGCCGGAGCTTCCCTACCGCGGAGGCTCGAAGTTGCAGCAGGTTGAGTGCGCGATATGCCTGGACGAGTTCTGCGAGGGCGAAACGGTAAAAAAGATACCGTACTGCAAGCACGTGTTCCACCCCGAGTGTATTGACACGTGGCTTGTGGCGCACGTGACGTGCCCGGTGTGCCGGTGTGAGAAGACTTGTTGTGAGGTTGGGAGAGTGGAGTGTGGGAGCGTGGAGGAGCGTGGGGGAGAAGGAGAAGGAGAAGAAGGAAGAGAGGTTGGGTTTGAGTCCGTAGGAGAAGCAGTGACTGAGACAAGAATAAGGGGAAGTAGTAGTGGCTCCAGGATTGGGATAAGGAGATCGGTGAGTTTTTGA 651 0.553 MELHNRRLLLLNEDVPINSEPPPPPSSSMFSTNLQLPPRPIFTSHLAYVFLILFTTVFFLGFVLLYIRHFSSDSDAFRSRIYRRNSSSGDAADNPLPELPYRGGSKLQQVECAICLDEFCEGETVKKIPYCKHVFHPECIDTWLVAHVTCPVCRCEKTCCEVGRVECGSVEERGGEGEGEEGREVGFESVGEAVTETRIRGSSSGSRIGIRRSVSF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2709 216 SMART ring_2 112 153 IPR001841 -
Dod03g2709 216 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Dod03g2709 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 159 IPR013083 -
Dod03g2709 216 PANTHER RING-H2 FINGER PROTEIN ATL57 21 188 - -
Dod03g2709 216 PANTHER RING FINGER DOMAIN-CONTAINING 21 188 - -
Dod03g2709 216 Pfam Ring finger domain 111 154 IPR001841 -
Dod03g2709 216 SUPERFAMILY RING/U-box 106 157 - -
Dod03g2709 216 CDD RING-H2_PA-TM-RING 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2709 Dod-Chr3 58724506 58725312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2709 44 154 C3H Transcription Factor Family AT2G27940 36.296 1.22e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2709 - K10664 gmx:102663476 155.606