Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2657 ATGGCAATTATAGGCCTCAAGAGTTTTGGACGTGAATTGTCTCTCTTTTTGTTGTATATATCATTCATATTTCCTAATTTACTTGTTGAATTTAATGTTATTATGGATATATTACAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTTGTCCCCTGACCAGCAACAATATGATGAGAAAAATATTCGTAGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACAAGTCTGAGTGATATTGAAGAGTTAAAGACTGAACGTCTTGGGCTTCGGAATAGAATTGAAAAGAAAGCAGCATATCTGCAAGAGCTGGAGGAGCAATTGGTTGGTATTCAGAACCTTATACAAAGAAATGAGCAATTATATGGCTCAGAAAACCCTCCCAGCGGTGTATCTTTACCTTTTATTCTGGTACAGACACGTCCACATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGTAGTCCTTTTGAGCTGCATGATGACAACTATGTGCTAAAGGCAATGAAAAGACCACAGGGTGATAATATGACACACAATATTATGGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGAATCAGTCACAAGTTCCTCCTTCAGTTTCAATCCTTCCAGTTAGGCCTCCAACATCGCCCCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTAA 786 0.3855 MAIIGLKSFGRELSLFLLYISFIFPNLLVEFNVIMDILQVADELVAEFADPSNSVLSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERLGLRNRIEKKAAYLQELEEQLVGIQNLIQRNEQLYGSENPPSGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMKRPQGDNMTHNIMDGGEGSSMSGLNQSQVPPSVSILPVRPPTSPPLPGILKARVKNEH* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2657 261 Coils Coil 112 146 - -
Dod03g2657 261 Pfam Transcription factor DP 104 214 IPR014889 -
Dod03g2657 261 SMART E2F_TDP_2 10 96 IPR003316 GO:0005667|GO:0006355
Dod03g2657 261 Gene3D Transcription factor DP 102 223 IPR038168 -
Dod03g2657 261 MobiDBLite consensus disorder prediction 216 236 - -
Dod03g2657 261 SMART DP_2 103 259 IPR014889 -
Dod03g2657 261 PIRSF Txn_factor_DP 37 261 IPR015648 GO:0005667|GO:0051726
Dod03g2657 261 MobiDBLite consensus disorder prediction 209 251 - -
Dod03g2657 261 Gene3D - 26 101 IPR036388 -
Dod03g2657 261 Pfam E2F/DP family winged-helix DNA-binding domain 32 96 IPR003316 GO:0005667|GO:0006355
Dod03g2657 261 PANTHER TRANSCRIPTION FACTOR DP 39 261 IPR015648 GO:0005667|GO:0051726
Dod03g2657 261 SUPERFAMILY E2F-DP heterodimerization region 103 208 IPR037241 -
Dod03g2657 261 CDD DP_DD 101 203 IPR014889 -
Dod03g2657 261 SUPERFAMILY "Winged helix" DNA-binding domain 19 97 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2657 Dod-Chr3 58108763 58112197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2657 29 204 E2F-DP Transcription Factor Family AT5G02470 51.685 3.70e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dod03g2657 DP 8.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2657 K04683 - jre:108988357 379.022