LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g2588	ATGTCCTCACGGAAATTGATGCCTGATGCTACACCGAACCTGACCAGTTTGGTTGTCGTTGCGATTGCAAATGCTTTTGCATTGTCCTCTGCATTGTACATCGCATGGGACATCTCCGGTGGACATGTGAATCCGGCAGTGACCTTTGCAATGGCAGTTGGAGGCCACGTCGGTGTTCCAACTGCTCTCTTTTATTGGGTTTCTCAGCTCATTGCCTCTGTCATGGCTTGCCTTGTCCTGAGGGTTGTTGTCGTCGGAATGCATGTCCCAACATACGCTATTGCTGAAGAGATGACAGGGGACCCTAGGCGTGGTCCATTGAGTGCTACAAGCACAGTTGCAGTTGGGTTAATAGCTGGAGCAAATGTGTTAGCCGCTGGTCCATTCTCTGGCGGGTCAGTGAACCCTGCCTGTGCTTTTGGCTCTGCTGCAATTGGTGGCAGTTTCAGGAACCAAGCCGTCTATTGGGTAGGACCATTGCTTGGTGCTACTGTAGCTGGCCTGCTCTATGACAACGTTGTGTTTCCTTCACGGGCTACGGATTCAGTTAGAGGAGTTTCTGAAGGAGCTGGGGTGTAA	579	0.513	MSSRKLMPDATPNLTSLVVVAIANAFALSSALYIAWDISGGHVNPAVTFAMAVGGHVGVPTALFYWVSQLIASVMACLVLRVVVVGMHVPTYAIAEEMTGDPRRGPLSATSTVAVGLIAGANVLAAGPFSGGSVNPACAFGSAAIGGSFRNQAVYWVGPLLGATVAGLLYDNVVFPSRATDSVRGVSEGAGV*	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g2588	192	Pfam	Major intrinsic protein	99	170	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod03g2588	192	Pfam	Major intrinsic protein	15	87	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod03g2588	192	PANTHER	AQUAPORIN TIP5-1-RELATED	100	189	-	-
	Dod03g2588	192	PANTHER	AQUAPORIN TIP5-1-RELATED	1	100	-	-
	Dod03g2588	192	PANTHER	AQUAPORIN-8	100	189	IPR034294	-
	Dod03g2588	192	PANTHER	AQUAPORIN-8	1	100	IPR034294	-
	Dod03g2588	192	SUPERFAMILY	Aquaporin-like	11	177	IPR023271	-
	Dod03g2588	192	ProSitePatterns	MIP family signature.	42	50	IPR022357	-
	Dod03g2588	192	Gene3D	Glycerol uptake facilitator protein.	99	185	IPR023271	-
	Dod03g2588	192	Gene3D	Glycerol uptake facilitator protein.	1	98	IPR023271	-
	Dod03g2588	192	PRINTS	Major intrinsic protein family signature	24	48	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod03g2588	192	PRINTS	Major intrinsic protein family signature	116	138	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod03g2588	192	PRINTS	Major intrinsic protein family signature	153	173	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod03g2588	192	PRINTS	Major intrinsic protein family signature	61	80	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g2588	Dod-Chr3	57532299	57534127	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g2588	1	192	Major Intrinsic Protein MIP	AT3G47440	57.944	5.27e-78	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g2588	K09873		-	gmx:100801448	293.508

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g2588	03	57532299	57534127	Dod03g2588	03	57532299	57534127	ECH