Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2558 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAATGCTAACAGCAGGCAAGTTACATTCTCAAAGAGAAGAACTGGGTTGCTTAAGAAGGCTCAGGAACTCGCCATTCTTTGCGATGCAGAGGTTGCTGTTATCATCTTCTCCAACACAGGGAAACTCTTCGAGTTCTCGAGTTCTGGTATGAAGCGGACACTTTCAAGATACAATAAATGCACTGATTCTTCAGAGGTGGCGGCAGTGGAATATGAAGCAGAGAAGGAAGATGCTAAGATGGTGGAGTTCCTTAAAGATGAAGTTGTGAAGCTAGAAACAAAGCAATTACGGTTGATGGGTAAGGACCTGACAGGATTGAGCTTAAAGGAAATGCAACATCTGGAGCAACAACTGAATGAAGGGTTATTGGCTGTCAAGGAGAGGAAGGAGGAACTACTTATGGAGCAACTGGAGCAGTCTAGAGTACAGGAGCAGAAGGCTATGTTGGAGAATGAAACTTTGAGGAGACAGGTTGAGGAGCTTCGTTGTCTGTTTCCAGTACCAGAACCTATAATCCCATCTTATCTTAAGTATCACCATATGGAAAGAAAGAGTATGTTCGCAGATAATGGGGTTAAGCATCCCAACTTGGCCAGTAACTGTGCAAATGAGAAAGGAGATTCAGACACCGCATTGCATTTAGGGTTACCAACTGATGTTAATCACAAGAGGAAGGCACCTGAGAGAGAAACCTTCTCTAATGATTCGGAGAGTCAAGTGGCTCTACTCTGA 768 0.4388 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSEVAAVEYEAEKEDAKMVEFLKDEVVKLETKQLRLMGKDLTGLSLKEMQHLEQQLNEGLLAVKERKEELLMEQLEQSRVQEQKAMLENETLRRQVEELRCLFPVPEPIIPSYLKYHHMERKSMFADNGVKHPNLASNCANEKGDSDTALHLGLPTDVNHKRKAPERETFSNDSESQVALL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2558 255 Coils Coil 149 176 - -
Dod03g2558 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 MobiDBLite consensus disorder prediction 230 244 - -
Dod03g2558 255 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Dod03g2558 255 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 233 - -
Dod03g2558 255 Coils Coil 123 143 - -
Dod03g2558 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g2558 255 MobiDBLite consensus disorder prediction 230 255 - -
Dod03g2558 255 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g2558 255 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Dod03g2558 255 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Dod03g2558 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod03g2558 255 PANTHER MADS BOX PROTEIN 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2558 Dod-Chr3 57133428 57137123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2558 1 248 MADS-box Gene Family AT5G13790 56.225 6.51e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod03g2558 K-box 4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2558 - - rcu:8259342 373.244