Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2541 ATGAAGAGATTGAGGTCCAGCGAGGACCTTCACTCCTACGGTGACAAGAATGCGAGCAAGGACTCGAATCTGAATCGGTCCTTTTCGTCTTCTCAGCGAAGTTTCTATTACAAGCCTGATAGTGCACCGCGGAAAGGCTCGCTCTCTTCGTCGTCCTCTTCCCGCTACGACAGGGATCGAGCGGTTGATGACGATCGGGAGGGCTCGAGGATGGTTCGGAAGCGATCGGAGCACGATTTCGACGGTTTCGATCGGAGGAAAGGGTTTGATCGGTACAGAGACGGTGGCGGTTATGGCAGCGGCGGCGGTGGTGGAGGAGGAGGAGGAGGGGATCGTGGTTTGATTCACCGGTCGGAGAGCTTCTGCGGCGGGTCGAGGAGGGAGTTTCCGAAGGGGTTCCGGTCGGAGAGGGACCGGCCACGAAGGGAAGATGGCGTGTTGTCGTGGCGGAGAGGGTTGAAGGATTTCGACGAGAGTAGCACCGGCGGCGGACGAGGAGGGAGTAGTAGAGTGTCGGCTTCGGCGGCGGCGGAGGAGAGGGTGGTTGTGCGGTCGCCGAAGGTTCTGAGGGATGTGAAGTCGCCGACGTGGTCGAAGGACTCGGAGAGTGAGCAATCGAGGAAGAGGTCTTCTTCTTCGCCGAGAACATCATTGAGGGATGCAAAGTCCAAGTCCAAGTCACCCACCTGGTCCTCCAAGGACTCAGAGAGTGAGCAATCAAAGAGTGTTGAGCAATCGAAGAGCGTGGAGGTGAAGAAAACTGAGGAGTTGCAGGTTCAGAGTGGGAGTGGCAGTGAAATGGAAGAAGGGGAGCTCGAACCTGAACCGGTGCCGCCGCTGACTGAACCTGGTAAGGTTCCCAACGTTCTGACTGAGAGTGAAGACCGCCGCAAGGACTCTGTGCGTGTGCCTGTGGAGAAGACTGATGAGAGGGAAGTTAAGAATGAGTGTAAGATCAATGATGCAGATACTGATATGGACGAGAGAAAGGAATCAACTGAGGATAAACCGAATGAGGAAATTGGTGCTGAGGTGAAAGGTGCTAAGAAGGAAGCTGATAAGGCGCAAGATGTTGTTCAAGATGATGCAACCAAGGAAATGCTTGTTACTGAGACTGAAGCTGAGGCCACGGATGGTGATCATGATAATAAAAAAGAGGATTGTTTGAAGGCTGATGTTGAGTGCAAGGAGGAAACAAAGGAGGGTGCGGATTTGGAGATGCCGGCGGTTGATGAAGAGGAGGGTAAGCAGGACAAGGGTGTAGATGTAGAAGCCAGAACAGGTCTTGACAAACCAGAGTTAAATGATGAAGTCTCGACTGAAAATGAAGTTCCAAAAGAAGTTAATAGGGAAATGATGGTGGAGGGTGTGACCGACAATGCAAAGGATAAAGGCAAAAGCATTTCTGTTCCCCCTACTGATGTTGCTCATTCTTCAGAAGATGCTCATGGAAAGGATAATGGCTTATGGATTGATACAGGATCGAGAGATCTCACAACATGCACTGCTGATGTTATGGAAGGTCCGAGCACCAGGGGATTCCAGTTGTTTTCGAGATCCCCTGTCAGAAAAGTAGAGAAAACAGAGCACTCAGTTCTCAACAAGCAGAAGGATGACAGTCTTGGGATGGAGCAGCTTGATCTTTCTCTTAGCTTGCCGAATGTTCTACTACCTATTGGTGCCCATGAGACAACAGCACAAGCCCCTGGATCCCCAAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACCACCAACTCAGATGGTTTTACTGCATCGATGTCCTTTTCAGGTTCCCAATCATTCTACCACAACCCAAGCTGTTCTCTAACAAAAAATTCGATGGACTTTGAACAATCTGTTGGCAGTCGCCCCTTGTTCGAAGGGATCGATTGGCAAGCCCAATCTCAGAATGATCCCAAACAGAAAGAAGTTCCTTTTAGCCAGAAATCTTCAATCAATGGAAATGGTTCTCTTTATCAGTCTCAAGCATCATGGGGTGTTTTAGATGGCCAAGCTGTGAAAGGCCAACCTTCTAGGGTTCTAGAAGGTAGCTCAAAAATGGGCGGTGGACTTGACAGGCAATTGAGTTTTCATAAGCAGTTTTCAGGACAGGCAAGACGCCATGATGATGTTAGATCTCCTACACAGAGTGTTGGGTCTCATGACATTGGATCAAATTATAGCTTTGAGAAAAAGAAGGAAGCTAGAGACAGGAGTAACGGTAGTTTGTATCGAACTACTGGCCAGAAGGAACAAGAACAAATTCTGATTGGTGGAGTTGACTTTGTCGAAACAATCATTGCAAGGCTAGTTTCTGAACCAGTGCATTCAATGTCCAGAAAGTTCCATGAAATGACAGGACAGTCAGTAGCAGGTCTCAAAGAGGGCATTCGTGAAATCATGGTCAATGCAGATAAGCATGGGCAGATACTTGCTTTTCAGAAAGTTCTGCAGAACAGGTCTGATATAACCTTGGAGGTCCTATTGAAGTGTCACCGAGCACAACTGGAAGTTTTGGTTGCTTTAAAAACCGGTTTAGCACATTATCTTCAGCTAGACAACAGCATTTCATCTTCTGATTTAGCTCAAGTTTTTCTGAACTTAAGATGTAGGAATCTCTCATGTCGAAGTCAATTGCCTGTGGATGAATGTGATTGCAAGGTTTGTGTGCAAAAGAACGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCATCTAATACATGTAGTTGGGTTGGGTGTGATTTTTGCCTTCACTGGTGCCATACTGACTGTGGATTGCGGGAATCTTATATTAGAAATGGGCATAGTACTGCTGGGTCAAGAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGATTGGCCAGTTGAAACTCTCTGCAAGGAGCTTGAATATGTCAAGAGAATTTTTTCTGCCAGCAAGGACATAAGAGGGAGACAGCTGCATGAGATCGCAGATCAAATGATGCCAAGCTTAGCAAACAAGTCCATCCTTCCTGAGGTTTTGAGGCACATCATGTCTTTTCTTTCTGATGGTGGGTCTTCCAAATTAGCCATGACAACAACTGGGAAGGAACAAATTAAAGAAATCAATGGGGTAGCTGGGCCGAGCCAGGAAGCTACTTGGCTGAAATCTATTTATTCAGAAAAGAAACCTCTGTTAGAAAGGCCACCAAACATCCTTCCTAGCTTTGAGCATAATGATAAAAGGACTCTGGCGCAAGAGTTGCAGATGGGTAGTGTTCAAAAGGACTTCTGTTTTGATGAATTGGATAGTATAGTCAAAATCAAACAAGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCAAGAAGAGAGGCTGAAGGGTTGAAACGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATACTAATCGAATTTCCAAGTTGCGATTTTCTGATACGGAGGAAATGCGTAGACAGAAACTTGAAGAGCTTCAGGCATTAGAGAGGGCACATCTGGAGTATTTCAACATGAAAAGGAGAATGGAGTCAGACATTAAAGAGCTATTATCCAAAATGGATGCTACTAAGAGAAGTCTTGCCATGTGA 3672 0.4646 MKRLRSSEDLHSYGDKNASKDSNLNRSFSSSQRSFYYKPDSAPRKGSLSSSSSSRYDRDRAVDDDREGSRMVRKRSEHDFDGFDRRKGFDRYRDGGGYGSGGGGGGGGGGDRGLIHRSESFCGGSRREFPKGFRSERDRPRREDGVLSWRRGLKDFDESSTGGGRGGSSRVSASAAAEERVVVRSPKVLRDVKSPTWSKDSESEQSRKRSSSSPRTSLRDAKSKSKSPTWSSKDSESEQSKSVEQSKSVEVKKTEELQVQSGSGSEMEEGELEPEPVPPLTEPGKVPNVLTESEDRRKDSVRVPVEKTDEREVKNECKINDADTDMDERKESTEDKPNEEIGAEVKGAKKEADKAQDVVQDDATKEMLVTETEAEATDGDHDNKKEDCLKADVECKEETKEGADLEMPAVDEEEGKQDKGVDVEARTGLDKPELNDEVSTENEVPKEVNREMMVEGVTDNAKDKGKSISVPPTDVAHSSEDAHGKDNGLWIDTGSRDLTTCTADVMEGPSTRGFQLFSRSPVRKVEKTEHSVLNKQKDDSLGMEQLDLSLSLPNVLLPIGAHETTAQAPGSPSQARSVQSLSNTFCTTNSDGFTASMSFSGSQSFYHNPSCSLTKNSMDFEQSVGSRPLFEGIDWQAQSQNDPKQKEVPFSQKSSINGNGSLYQSQASWGVLDGQAVKGQPSRVLEGSSKMGGGLDRQLSFHKQFSGQARRHDDVRSPTQSVGSHDIGSNYSFEKKKEARDRSNGSLYRTTGQKEQEQILIGGVDFVETIIARLVSEPVHSMSRKFHEMTGQSVAGLKEGIREIMVNADKHGQILAFQKVLQNRSDITLEVLLKCHRAQLEVLVALKTGLAHYLQLDNSISSSDLAQVFLNLRCRNLSCRSQLPVDECDCKVCVQKNGFCRECMCLVCSKFDNASNTCSWVGCDFCLHWCHTDCGLRESYIRNGHSTAGSRGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWPVETLCKELEYVKRIFSASKDIRGRQLHEIADQMMPSLANKSILPEVLRHIMSFLSDGGSSKLAMTTTGKEQIKEINGVAGPSQEATWLKSIYSEKKPLLERPPNILPSFEHNDKRTLAQELQMGSVQKDFCFDELDSIVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYTNRISKLRFSDTEEMRRQKLEELQALERAHLEYFNMKRRMESDIKELLSKMDATKRSLAM* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2541 1223 Coils Coil 1124 1162 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 398 488 - -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 824 839 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 984 1003 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1157 1179 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 839 854 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 911 931 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 865 886 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 785 807 IPR004082 -
Dod03g2541 1223 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1118 1138 IPR004082 -
Dod03g2541 1223 Coils Coil 1200 1220 - -
Dod03g2541 1223 PANTHER PROTEIN OBERON 4 1 1223 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 183 254 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 1 16 - -
Dod03g2541 1223 Coils Coil 338 358 - -
Dod03g2541 1223 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1223 IPR004082 -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 1 365 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 121 158 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 56 93 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 398 462 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 730 744 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 289 365 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 704 749 - -
Dod03g2541 1223 CDD PHD_OBE1_like 904 963 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 17 37 - -
Dod03g2541 1223 Pfam Coiled-coil region of Oberon 1095 1211 IPR032535 -
Dod03g2541 1223 Coils Coil 1172 1192 - -
Dod03g2541 1223 MobiDBLite consensus disorder prediction 638 659 - -
Dod03g2541 1223 Pfam PHD - plant homeodomain finger protein 874 997 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2541 Dod-Chr3 56956587 56962969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2541 874 1022 PHD Gene Family AT5G57380 26.846 1.90e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2541 - - gmx:100817003 1566.98