Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2540 ATGGCAACAACAACATACCCACCACCACCACCACCACCACCATATTACAGGCTCTACAAAGATTACTTGGAGGATCCTAAGTCTGCTCCAGAGCCTCCTCCTCCTATAGAAGGGACCTACGTTTGTTTTGGGGGCAATTACACTGCAAGGGCTTTTACCCTCTTTCTTTACGTGTGCGATTTAATGGCTTGTTGTGGCTGTGTTCTTGTTAGAATAAGCTATGGTGTGATAATTGCGGAACAAGTGACGTTTACCTACCTTGGAAGAACAAGGGATTTCAAGAAGGAGCTAAGATCACTGAATGGAGAATTGCAGCTACACATTTTGGAGCTTTATGATATTCTTATTAAGAGACCATCACAGTATGCGAGGAGAATTGAAGAAATTTCGACTGTATTAAAAAATTTGCATCACCTTTTAAATTCATTACGTCCCTATCAGGCGAGAGCAACATTAATTCACGTTTTGGAACTTCAGATTCAATGCCGTAAAGAAGCAGTGGAGGACATAAAGAGGTGCACTAAATTGATTGGGGAGGAGAGAAGAGGCACGAAGCCTACTGAACGAGTCTTTGGCAACACTTGA 585 0.4239 MATTTYPPPPPPPPYYRLYKDYLEDPKSAPEPPPPIEGTYVCFGGNYTARAFTLFLYVCDLMACCGCVLVRISYGVIIAEQVTFTYLGRTRDFKKELRSLNGELQLHILELYDILIKRPSQYARRIEEISTVLKNLHHLLNSLRPYQARATLIHVLELQIQCRKEAVEDIKRCTKLIGEERRGTKPTERVFGNT* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2540 194 Pfam MED7 protein 10 174 IPR009244 GO:0003712|GO:0006357|GO:0016592
Dod03g2540 194 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 10 174 IPR009244 GO:0003712|GO:0006357|GO:0016592
Dod03g2540 194 SUPERFAMILY Mediator hinge subcomplex-like 91 175 IPR037212 GO:0016592
Dod03g2540 194 Gene3D - 85 180 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2540 Dod-Chr3 56944814 56950158 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Dod03g2540 Med7 4.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2540 K15148 - gmx:100812231 194.512