Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2521 ATGGAAGAAGCAAGCATGGAGGAGGGGGAGAGCAGTTCTAGGGTTTCTCCTTCTCATTATGAGCAGCAGCAGCAGCACACCGCAGGGATCGTAAAGAGGATCCGATTGGAGAACTTCATGTGCCATTCCAATTTCGAGATGGAGTTCGGCGATTCCGTCAATTTCATCCTCGGTCAAAACGGAAGTGGGAAGAGTGCCATTCTGACTGCATTATGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGGGGATCCACTTTGAAGGATTTCATCAAAAGTGGTTGCAGTAATGCTGTCATCTGTGTTGAAATTCAAAATGAAGGAGAAGATGCTTTCAAGCCTGACACATATGGTGATGTTATCATTATTGAGCGTAGGATATCTGAATCCACTAGCTCCACTACATTAAAAGACCACCAAGGAAAGAAAGTAGTCAATCGGAAAGCAGATCTTCAAGAAATCATTGAACATTTTAATATTGATGTGGAGAATCCGTGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAACAAAGATAAATTTAAGTTTTTTTACAAGGCCACACTTCTACAGCAAGTCAATGATCTTCTGGAAAGCATTTCCATTGAAATAGGAGAGGCACATGGCATAGTTGAAGATTTAGCACGTGCAATAAGGCCCATTGAGAAGGAGCTTAATGAACTGGAAGTTAAAATTAAAGATATGGAAGAAGTTCAACAAATGTCTGTTGAGGTCCAGCAGTTAAAGAAGAAACTTGCATGGTCATGGGTTTATGAGGTGGATAAGAAACTTCAGGCGCAAAGTATAAAGATTGATAAGCTAAAACCCCGGGTACCTGCCTGCCAAGCTAAGATTGATCAGTGTCTGCATGAGGTTGAAAGATTGAGTGAAAGCTGCTCCAAGAAGAAAGATGAAATTGCAAGTATGTTGGAAAAGACATCACAACTTAAGAAAATGAGGGAAGATTTAAAGCAGTCTGTGTCCTTGGCTACCAAAGAAGTGCTCAAACTTGCGCAAGACTGCAAATGCAAAGCTAGCAACATAGAGAAGACGTTTCAACAACTTAAAATGCTTGAACAACAAGTCCAGGATATTTGTGAGCAGCATGTGAAACATACTCAGGCTGAAAGATCTGACCTGGAGGAGAAACTGAAGGGGCTCCAAGAAGAGGTGCATGCTGCTGAGCAAGATTGGGAAAGGTTGAAGGAAGAAGAGGTTATGTTAAGGAACAGCATACATAGACAAGAAGATGAAATCAAAATGATTGGTAATAAGATGCAAGATCATGAAAACAAGTATCGAGATATCTCCAAGAGTATCCGTGTTCTTGAACAAAACCAAATCAATAAGATTTCAGCATTTGGAGGTGAAAAAGTGATGAATCTGTTGCGTATAATTGAGAGATATCATCAAAGGTTTAAGATGCCACCGATTGGTCCAATTGGTGCTCATTTGAAGTTGCTTAATGGTGATAAATGGGCGGTTGCTGTTGAACATGCCATTGGGAGAATGCTCAATTCCTTTATAGTGACCGATCATAAGGATTTTCGTCTTCTGAAACAATTTGCCAAGGAAGCAAACTATGGCCACCTTCAAATTATTATTTATGATTTTTCAACACCAAGGTTGACAATTCCACACCACATGGTTCCCGATACAGAATATCCATCAATCCTTTCCATCTTACAGTCTGACAACCACACTGTGACTAATGTCTTAGTGGATCTGGGAAATGTTGAGAGGCAAGTGCTCGTAAAGGATTATGATACTGGGAAAGTGGTTGCCTTTGAACAAAGGATCCGAAATCTGAAGGAGATCTACACTGCAGAAGGACATAAAATGTTTTCTCGAGGTCCAGTGCAGACTGTTCTTCCACCAAATAGGAGGATAAGAAGTCGTCTATGTAGTTCTTATGAAGATCAGATTAAGAAATTTCAAAGTGAAGCATCTGATGAACAAAAGGCAGCAGATGAATTTAAAAGGAGTAAAAGAGAGGCAGAGATCAAACTCGATGATCTTCATAGGAGTCTGAAATCTGTAAAGAGGCATTGTGAAACAGCAGGAAGAAGTTGTAGTTCTAGGAAGCTAGCTTTGGAGGAGGCGGTGCAACAGCATGCTGCTGAAAATAGCTCAATACCTTCATCATCTGTTGAGGAGCTTAATGAAGACATTTCAGAACTTCAGAAGAAATTAGAAGAGGAGCAAGTATTGTTGGAAGGCCTTGAGCAAAGGAGGGATGAAGCTTCCGTTAAAGCAGATGGTCTTAAAATAAAATTTAACAAGCTGTGTGAGTCGACAAATGGGGATATTGCTGCCTGTAACACAGCTGAGACTGAACTGATGAAGATTGAAGAAGAAATAAAATCAGCAGTAGAGGGGAAGGATCATTATGATGAACTCATGAAAAAACAGATTGCACTTGTTAAGAAGGCAGAGGAAGAGTATCAGGAGCTTGCAAAAATGCGTGAGGAAAACGCTAAGAAGGCTTCCATAATTTGCCGTGAGACTGAGATGAATTCATTAGGAGGTTGTGATGGGAAAACCCCGGCACAAATCAGTGCCCAATTAGAAAAACTAAATAAGACAGTTCAGCATGAGAGCCAAAGGCACACTGAATCAATTGAGGATCTTAGGATGCTTTATGAGAAAAAAGAACGTAAGATTATAAAAAGGCAGCAAGTGTACAAAGCTCTTCGTCAGAAATTGGATGCGTGCCAGAGAGCCTTAGAGACACGAGGGAGCAAGTTTAAGAGAAATGCAAATTATCTGAAGCGCCAGCTGTCCTGGAAATTTAATGGCCATTTGAGAAAGAAAGGGATCAGTGGACTTATAAAAGTTAATTATGAGGAGAAAACATTATCAATTGAGGTACAGATGCCTCAAGATGCATCAAACAGAGCTGTTCGAGACACCAGAGGGCTTTCAGGTGGGGAGCGCTCTTTTTCAACATTGTGCTTTGCATTAGCTCTTCATGAAATGACAGAAGCTCCTTTCAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGTCGCACAGGGATCCCAATGGTTATTCATCACTCCTCATGATACTAGCATGGTGAAGCCGGGACCTAAGGTCAGGAAGCTGCAAATGCGAGCTCCACGCTCTTGA 3198 0.409 MEEASMEEGESSSRVSPSHYEQQQQHTAGIVKRIRLENFMCHSNFEMEFGDSVNFILGQNGSGKSAILTALCVAFGCRAKGTQRGSTLKDFIKSGCSNAVICVEIQNEGEDAFKPDTYGDVIIIERRISESTSSTTLKDHQGKKVVNRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISIEIGEAHGIVEDLARAIRPIEKELNELEVKIKDMEEVQQMSVEVQQLKKKLAWSWVYEVDKKLQAQSIKIDKLKPRVPACQAKIDQCLHEVERLSESCSKKKDEIASMLEKTSQLKKMREDLKQSVSLATKEVLKLAQDCKCKASNIEKTFQQLKMLEQQVQDICEQHVKHTQAERSDLEEKLKGLQEEVHAAEQDWERLKEEEVMLRNSIHRQEDEIKMIGNKMQDHENKYRDISKSIRVLEQNQINKISAFGGEKVMNLLRIIERYHQRFKMPPIGPIGAHLKLLNGDKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQFAKEANYGHLQIIIYDFSTPRLTIPHHMVPDTEYPSILSILQSDNHTVTNVLVDLGNVERQVLVKDYDTGKVVAFEQRIRNLKEIYTAEGHKMFSRGPVQTVLPPNRRIRSRLCSSYEDQIKKFQSEASDEQKAADEFKRSKREAEIKLDDLHRSLKSVKRHCETAGRSCSSRKLALEEAVQQHAAENSSIPSSSVEELNEDISELQKKLEEEQVLLEGLEQRRDEASVKADGLKIKFNKLCESTNGDIAACNTAETELMKIEEEIKSAVEGKDHYDELMKKQIALVKKAEEEYQELAKMREENAKKASIICRETEMNSLGGCDGKTPAQISAQLEKLNKTVQHESQRHTESIEDLRMLYEKKERKIIKRQQVYKALRQKLDACQRALETRGSKFKRNANYLKRQLSWKFNGHLRKKGISGLIKVNYEEKTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVAQGSQWLFITPHDTSMVKPGPKVRKLQMRAPRS* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2521 1065 Coils Coil 218 248 - -
Dod03g2521 1065 Pfam RecF/RecN/SMC N terminal domain 31 1054 IPR003395 -
Dod03g2521 1065 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1065 - -
Dod03g2521 1065 Coils Coil 377 411 - -
Dod03g2521 1065 Coils Coil 355 375 - -
Dod03g2521 1065 Coils Coil 299 319 - -
Dod03g2521 1065 Gene3D - 783 1055 IPR027417 -
Dod03g2521 1065 Coils Coil 874 894 - -
Dod03g2521 1065 Coils Coil 642 690 - -
Dod03g2521 1065 MobiDBLite consensus disorder prediction 1 23 - -
Dod03g2521 1065 Coils Coil 780 835 - -
Dod03g2521 1065 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 12 1065 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Dod03g2521 1065 CDD ABC_SMC6_euk 943 1065 - -
Dod03g2521 1065 Coils Coil 419 453 - -
Dod03g2521 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 1049 IPR027417 -
Dod03g2521 1065 SUPERFAMILY Smc hinge domain 467 625 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Dod03g2521 1065 CDD ABC_SMC6_euk 31 185 - -
Dod03g2521 1065 Gene3D - 31 282 IPR027417 -
Dod03g2521 1065 Coils Coil 724 765 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2521 24 1065 Structural Maintenance of Chromosomes family AT5G07660 55.896 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2521 K22804 - gmx:100816916 1467.6