Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2520 ATGGAGAAAAACGACAGTAAGGTCTGCAAGATCTGCAATAAGTGCTTCTCCAATGGAAAAGCCATGGGAGGCCACATGAGATCACACTTGGCCAAATTGCCAGTTCCTCTTAAGCCAGAAACAAAGAATCAACCACTAGACAACTTCACCGAGTTAAACCACAGTTCAACTCAATCTCCTTCCTCACTAAATTTCCATTCCAAAAAGAAACCAATAGAATACTTTCGATCTTTGGAATACAGTTTCTTTGCCTTCTTGCCAAACTCAGATAAAGGAATTGGATTTCTACCTTACCCTAAAAACCCGACCCGCAAAAGATCCAAATGTCGCCGTAGATTTATTGCAGCAGCTGAGAAAAAAGTTGAACCAAGATACATGAGTTGGATATCTGAACCTTTTCCCGCCGTAGAAGCTGCTAGGTCTCTAATAATGCTTTCCAAGGACAAGTGGACAGATAGCATGGAGATCAAGACACAAAAAATGGAGGAAGCCAACAAAATGGAAGCAAAAGATGATGGAACTAGTAGCGATGCCTCACTCGTTCAAACTCACACTCGAGTCAAGTTCAAGTGCAAGATGTGCTCGAAAATGTTTCAATCTTACCAAGCTCTCGGGGGACACAAAGCAAAGCATAGGAAAATTCAGAATCTATGCCAAGAAGGTGGTAGCATTGAAGATGGTGGAAGCAACAACATTACTGATGTTGTAGATCAAAAAGCAGTCGAGTGCCCATATTGCTTCAAGGTGTTCAAGTCTACTCAAGCACTTGGAGGGCATAAGAAGGTACACCTTAACAATCCTATTGTAGCAAATGCTAACGCCACTGTTGATAAATTTGATGACAAATCCCTAGATCTTAATTTTCTAGCTCCTAGAGAAGATCAAGAGGTAAGCCAAATTGAATTTTCAACTGTGTCCAACACAGAATGA 930 0.4108 MEKNDSKVCKICNKCFSNGKAMGGHMRSHLAKLPVPLKPETKNQPLDNFTELNHSSTQSPSSLNFHSKKKPIEYFRSLEYSFFAFLPNSDKGIGFLPYPKNPTRKRSKCRRRFIAAAEKKVEPRYMSWISEPFPAVEAARSLIMLSKDKWTDSMEIKTQKMEEANKMEAKDDGTSSDASLVQTHTRVKFKCKMCSKMFQSYQALGGHKAKHRKIQNLCQEGGSIEDGGSNNITDVVDQKAVECPYCFKVFKSTQALGGHKKVHLNNPIVANANATVDKFDDKSLDLNFLAPREDQEVSQIEFSTVSNTE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2520 309 MobiDBLite consensus disorder prediction 42 64 - -
Dod03g2520 309 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Dod03g2520 309 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Dod03g2520 309 Gene3D Classic Zinc Finger 186 263 - -
Dod03g2520 309 MobiDBLite consensus disorder prediction 43 64 - -
Dod03g2520 309 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 295 IPR044303 GO:0006355
Dod03g2520 309 SMART c2h2final6 189 211 IPR013087 -
Dod03g2520 309 SMART c2h2final6 241 263 IPR013087 -
Dod03g2520 309 SMART c2h2final6 7 29 IPR013087 -
Dod03g2520 309 Pfam C2H2-type zinc finger 242 263 - -
Dod03g2520 309 Pfam C2H2-type zinc finger 189 213 - -
Dod03g2520 309 Pfam C2H2-type zinc finger 8 31 - -
Dod03g2520 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Dod03g2520 309 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 295 - -
Dod03g2520 309 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Dod03g2520 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Dod03g2520 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Dod03g2520 309 SUPERFAMILY beta-beta-alpha zinc fingers 8 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2520 Dod-Chr3 56721751 56722680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2520 5 300 C2H2 Transcription Factor Family AT3G60580 29.582 3.02e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod03g2520 zf-C2H2_6 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2520 - - ccaj:109798515 287.345