Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2509 ATGGACTTGAAGTCAAATCACACTCCTGTTCTCACTGATGCTACACCCATAACAAAGTCAAGACTGGGTGTGCCTTCCAGTTTATTGCCTTACTCCCCTACTGGGACTACCTTTCAACATGGTATGTTATTGACTATCCCGAGGAAGAAAACTGGAATTCTTGAAGATGTTCGGTCTAGTGGTTGGTTGGATGCCATGAAGTCATCCTCTCCTCCACCCAGGAAGATAACAAAGGATGTTAGTCATGGGTTTGCATCATCTGAAGCTGATTCTGCTTATTTTAACTGGCTGCTAAAGTATCCATCAGCACTCACATCTTTTGAGCAAATTACAAACTATGCAAAAGGCAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCTATTGTCGATAATCCTGACTGTGCTTTCATGTCTGACAATATGCGTGCCGCTGTTAAAAAGGTGGCAGAATATTTTCCGACAGCTATAATTAGTGGAAGAAGTCGTGACAAGGTATATGAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGCCATGGTATGGACATCATTGGCCCTGTTAGACAGTCTGTACCTGATAACCACCCTAATTGCATAATTAGGTCAACTGACAAGCAGGATAAGGAAGTTAATTTATTCCAACCTGCTGCTGAGTTCCTACCCATGATTGATGAGGTATACAAGTCTCTTGTTGAGAGTACACAAGACATTAAAGGAGCCAAAGTTGAGAACAATAAGTTTTGCGTGTCTGTACATTACCGCAATGTAGATGATAAGAGTTGGGATATGGTAGGGCAAATTGTCCATGATGTTCTGAAGGGCTATCCACGTTTACGACTAACTCATGGGCGCAAGGTTTTAGAGGTCCGACCAGTGATCAACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGGCTGAGCAACTGTGATGATGTACTTCCTATATATATTGGAGATGATCGAACAGATGAAGACGCATTTAAGGTTCTCAGAGAGGGAAATAAAGGTTATGGGATCCTAGTGTCCTCGGCGCCAAAGGAAAGCAACGCAGCTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTTAAGTCACTTGTGGAAACATGTCAAGAGGTTTCCTGGAGCAGATTTGCGCACAGAAGACCTCTTATATTGGTAGCAGCAACAACAACAACGTTGTCGCTACCTCCTTGTTTTGTTCAAAGCTCCTGTGGTGGTGGTAACTGTAAATTCTTGGCTCGTATTTATATATGTCTCAAAGGATTAAAGAAAATTGCCAAGAGATTTTTTCCTTTTTCTTTTTTTGTTTCTTCTTTCTTTTTATTCAAAAGAGTATTGATATTGATCATTGGTGCTTCAGTTTTGGTCTCTCTGTATCTAACCACTAAACCCGGAGTTACATATGCAATTATTCATTTGTTAATTTTTTTTATATGTTGTTTTATTTTTATACAGTATATGTCTGTGATATATAGCTTTCCTTAG 1518 0.3986 MDLKSNHTPVLTDATPITKSRLGVPSSLLPYSPTGTTFQHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPPRKITKDVSHGFASSEADSAYFNWLLKYPSALTSFEQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYEFVGLTELYYAGSHGMDIIGPVRQSVPDNHPNCIIRSTDKQDKEVNLFQPAAEFLPMIDEVYKSLVESTQDIKGAKVENNKFCVSVHYRNVDDKSWDMVGQIVHDVLKGYPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNAAYSLRDPSEVMEFLKSLVETCQEVSWSRFAHRRPLILVAATTTTLSLPPCFVQSSCGGGNCKFLARIYICLKGLKKIAKRFFPFSFFVSSFFLFKRVLILIIGASVLVSLYLTTKPGVTYAIIHLLIFFICCFIFIQYMSVIYSFP* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2509 505 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 378 - -
Dod03g2509 505 Gene3D - 119 210 IPR023214 -
Dod03g2509 505 Gene3D - 225 390 IPR023214 -
Dod03g2509 505 SUPERFAMILY HAD-like 120 379 IPR036412 -
Dod03g2509 505 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 378 IPR044651 GO:0004805|GO:0005992
Dod03g2509 505 TIGRFAM T6PP: trehalose-phosphatase 116 377 IPR003337 GO:0003824|GO:0005992
Dod03g2509 505 CDD HAD_TPP 120 371 - -
Dod03g2509 505 Pfam Trehalose-phosphatase 122 367 IPR003337 GO:0003824|GO:0005992
Dod03g2509 505 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 121 340 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2509 Dod-Chr3 56614628 56621374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2509 113 376 Trehalose Biosynthesis Gene Families AT1G70290 26.241 1.04e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2509 K01087 - gmx:100819495 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2509 03 56614628 56621374 Dod03g2509 03 56614628 56621374 ECH