Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2506 ATGGCTCGTGGAAGAGTTCAGCTGAAGAGAATTGAGAACCCGGTGCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTGAAGAAGGCCAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGCCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTGGCCACAAAAGGAACCATGCAAGGGCTCATAGAGAGATACATGAAGTTCACAGGGGAGGTTCAGCCTGAAGCAGCCACTGAAGCACATCCTATGGATGCTAAAAAGGAAGCCAATGTGCTGAAACAGGAGATCGAAACACTGCAAAAGGGTATCAGGTATTTGTTTGGAGGAGGAATTGGGACAATGACAATGGATGAATTACAAGTACTAGAGAAGAATCTCGAAATTTGGATTTATCATATTCGCTCAATGAAGATGAACATCATGTTGCAAGAAATTCAAGCTTTGAGAGATAAGGAGGGAACGCTCAAAGCGGCAAATGAGTATCTCCATGAGAAGGTTTTGGAGAATACTGCATATACTAACTTTGCTCCATTTGCTTCTGATGCTTCGTACCCGCTAACTATACAAGATGGAATTTTTCAGTTCTAG 603 0.4444 MARGRVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIERYMKFTGEVQPEAATEAHPMDAKKEANVLKQEIETLQKGIRYLFGGGIGTMTMDELQVLEKNLEIWIYHIRSMKMNIMLQEIQALRDKEGTLKAANEYLHEKVLENTAYTNFAPFASDASYPLTIQDGIFQF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2506 200 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Dod03g2506 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dod03g2506 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
Dod03g2506 200 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 200 - -
Dod03g2506 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Dod03g2506 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod03g2506 200 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod03g2506 200 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2506 Dod-Chr3 56585410 56593485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2506 1 200 MADS-box Gene Family AT1G71692 62.559 2.12e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod03g2506 K-box 6.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2506 - - gmx:100783345 332.413