Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2487 ATGGCTGCAATGAAGCCCACTAAGCCCGGTTTTGAAGAGCCTCACGAGCAGATTCACAAGATTAGGATAACTCTCTCCTCCAAGAACGTGAAAAATATCGAGAAGGTTTGCGCGGACTTGATTCGCGGTGCGAAGGACAAGAGCCTCAGGGTGAAGGGACCCGTCAGGATTCCAACCAAAGTTCTTCACATAACCACTAGGAAATCCCCCTGTGGATCCCATTATACTTTAATTCTGAGCTTTCGGTTCCCAAAAGCTAATTAA 264 0.4697 MAAMKPTKPGFEEPHEQIHKIRITLSSKNVKNIEKVCADLIRGAKDKSLRVKGPVRIPTKVLHITTRKSPCGSHYTLILSFRFPKAN* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2487 87 SUPERFAMILY Ribosomal protein S10 20 74 IPR036838 -
Dod03g2487 87 PRINTS Ribosomal protein S10 family signature 20 33 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dod03g2487 87 PRINTS Ribosomal protein S10 family signature 55 70 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dod03g2487 87 Pfam Ribosomal protein S10p/S20e 22 73 IPR027486 -
Dod03g2487 87 PANTHER RIBOSOMAL PROTEIN S20, PUTATIVE, EXPRESSED-RELATED 2 77 - -
Dod03g2487 87 SMART Ribosomal_S10_2 22 87 IPR027486 -
Dod03g2487 87 ProSitePatterns Ribosomal protein S10 signature. 44 59 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dod03g2487 87 Gene3D Ribosomal protein S10 domain 1 77 IPR036838 -
Dod03g2487 87 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 2 77 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2487 Dod-Chr3 56408768 56409431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2487 4 73 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 82.857 5.24e-38 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2487 K02969 - fve:101293827 137.502