Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2479 ATGGCCCATGCCATGACTGACGAGGAAGGTCCACAACCCGGCCCATCCACCAAACGGGCCTCCAGGAAGCATTCCCGCCAGCCCGACACCGCATTCCGCGGCGTCCGCAGGCGCAGCTGGGGCCGCTACGTTTCCGAGATAAGGCTGCCGGGCCAGAAGACCCGTGTATGGCTCGGGTCATTCGGGTCGCCCGAGATGGCGGCCCGCGCTTACGACTCCGCCGCATTCTTCCTGAAAGGAACCTCAGCGAACCTTAACTTCCCCGACCTCGTACACTCGCTGCCTCGCCCTCTTTCCTCGTCGAGGCGCGACATACAGTCAGCGGCCGCTAAGGCGGCTCTCGAGCCGGCCGAGGAACGGAGCGGGCAGGGCCCGACCCGGTCCTCGGGCGAACCGGATCCGGATGAGTGGTGGGAACGCTTGGGAGAGGATTCGGTTTGGACGACGTCGTCTGAGGATGTGAAGGAAGCAGATCCTCTTATGATCGAGTCCGCTTCTGTATCTGTTGGAGAATTGACATGGAACGAAGTCTTCAATTTCAATGACGATCTTCTCTCATTCTCCTGA 567 0.612 MAHAMTDEEGPQPGPSTKRASRKHSRQPDTAFRGVRRRSWGRYVSEIRLPGQKTRVWLGSFGSPEMAARAYDSAAFFLKGTSANLNFPDLVHSLPRPLSSSRRDIQSAAAKAALEPAEERSGQGPTRSSGEPDPDEWWERLGEDSVWTTSSEDVKEADPLMIESASVSVGELTWNEVFNFNDDLLSFS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2479 188 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Dod03g2479 188 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Dod03g2479 188 MobiDBLite consensus disorder prediction 1 35 - -
Dod03g2479 188 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Dod03g2479 188 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Dod03g2479 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 18 126 - -
Dod03g2479 188 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Dod03g2479 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 126 - -
Dod03g2479 188 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Dod03g2479 188 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Dod03g2479 188 MobiDBLite consensus disorder prediction 95 142 - -
Dod03g2479 188 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2479 Dod-Chr3 56361601 56362803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2479 16 116 AP2-EREBP Transcription Factor Family AT5G11590 56.863 1.98e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod03g2479 AP2 6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2479 K09286 - gmx:100783790 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2479 03 56361601 56362803 Dod03g2479 03 56361601 56362803 ECH