Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2476 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACATACACCAAAGTGTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAGTACTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTTCGCGAACCAGATGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTAATCGACGGCAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGGAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGGTTTGGAGCTGGAGGAGTGGGATCAGCATTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCATACAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCCACGAGCTACTACAGTGTGTATGGAGGAGCAGCAACAGCACAGTACCCAGTATACGGAACGGGACCTGCTGGAGGGATGATGACGGGTGCAGCGACAGCAGCAGCCGCCACGGCCTTTTACCCCTACCTGCAGTACGGCGGAGAAGGCAGTGGTGGCGGCTCAACCGGCGGTTATACTACTTCCGGGCAGGGTTATGGTGTGAACTACCCTCCTCACGGCCTCTTTCAGTATTCTCCCATTGCTTCAACTGGTGGCTATGCCCAGCACTATGCAACTCCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGTTTGTGCTCCATTCGCTACTTGCTTATACAATCCATTTATGGACTTTTTTTTTTCTTAATCTTTTTCTATATATGTCATGCAAGAATATATGACATGTTCTTGCATAGGCAGAAGTGA 921 0.4919 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGAGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGAATAQYPVYGTGPAGGMMTGAATAAAATAFYPYLQYGGEGSGGGSTGGYTTSGQGYGVNYPPHGLFQYSPIASTGGYAQHYATPMSLAPSPALQSGLCSIRYLLIQSIYGLFFFLIFFYICHARIYDMFLHRQK* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2476 306 Gene3D - 7 112 IPR012677 -
Dod03g2476 306 SMART rrm1_1 17 89 IPR000504 GO:0003723
Dod03g2476 306 PANTHER BOULE-RELATED 1 268 IPR037366 GO:0003729
Dod03g2476 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Dod03g2476 306 CDD RRM_RBM24_RBM38_like 16 91 - -
Dod03g2476 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Dod03g2476 306 PANTHER OS01G0876800 PROTEIN 1 268 - -
Dod03g2476 306 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2476 Dod-Chr3 56322526 56329042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2476 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 2.03e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2476 - - adu:107477578 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2476 03 56322526 56329042 Dod03g2476 03 56322526 56329042 ECH