Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2469 ATGGTGGTCAACGAGAGGCCCTCCAAGAGGATGAAGAGGAGAGTAACCGCCGATCTCTACGACTTCCTCACTTTTCCCTCCGCCGCCCCCGACGGAGCCTTCCGGAACTGCGTGCAGCGCTTCCTCGCCGACCATGCCCGCATAACGTTCCCGCCTTCACTGTTCCCCTCGCTGATGACGTGGCAGATCTTGTTCCGTGTGGGTGAACTCGTCGACGGCCCCGATCTCTCGCCCTCCGTCGTCACGCTCGACATTGTCGAGGAAGATGTCACTCGTTCTCGAGGTTCGGTGTACTGTGACCAGTGCCGAGTCGTTGGATGGAGTGGTCATCCGGTGTGTCGAAAGCGATATCATTTCATTATAAGGGCTGCAAGTGACGCCATTGAAGGATATCAAAGGCCTTGCTCAAGATGTGCAAGTCTTGTCCAACTATCTGAACCAAGGTGTAAATCGTGTAACTTCGACATTACCGCTGATGATCTTGAGGATTGGGTCTATCTTCAAATTGAAGATAACACCCATCTTCTGCATGGTGTTGTCCACTCCAACGGTTATGGTCACCTGCTTACCCTTAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGGTCTGATATTATGGCTTTCTGGGATAGGCTCTGTACTGCAATCTCCGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGTGTGGAATATCGAGTGCTGCATGCAATCACCAATGGACATTCCTGGTATGGCAATTGGGGTTATGAGTTTGGGAGTGGCAGCTATGCTCTTACCCAGGATGCCTATCAGAAAGCAGTGAATACCCTATCAGCCACGCCCTTGTCCTCATTTTCATTCCAGGGGCGGGGACTGCGAAACCGCCTCCAGTGTGTTATTTCTCTTTACCAGTCCTTGGCTGAGACTGAACTTCTGACAATTAAAGACCTCTTCTCCTTTTTGTTAACATTGATTCATGAACTTCGCAAGCCTATGACCAAGAAAACATCTACACAGAATGAATGTGCTAGCACATGTAATTTGTTGTGTGCATGGACGAGAAATGATGTTGAAGATGTGCAGCAGGCTTTGATCAAGGTATTGCTTGCATCGGCCGCCTGTAGCGAGGCCAAATGGGTGTCAAGGCGTGCTCTCAAGGGTGCAGTGTGCAAGGGTGTTGCACCTCCAGAGCTTTTGGACTATAGTCTTAAACACTTGCAAGGAAAATTAGCTGCCAATGGAATGGTTGTTCGCACTCGATGCAATCCCATTAGCAGTGCTATTGAATTCAGGCTGGAAACAGTACGTGATATATTAGGGGCAGATTCAAGCCATCCTTCAGAAGAACAAGTGATCTCTGATCTGAGTTTCTTATTTGATACGATAATTCACCCTGGCAAAATGGTGAACTACAGCCCTAAGATTATGAGGAAAAGGGTGGCTGATTCGGCAAGGAAGCTCCTTGACTGTAAGCAGTTTATGAAGGATTACAAGCCAGATGTAGTGGCTGTTGAGCTGCCATCAGTCATTAGGCTGTGGTGTCAAGTGGAGCTTTCTGATCAGCCTAAAGATGATCCATCCCCACCACCGGAGCTAATCGTGTTGCCTTTGAATGCTACTGTTGGTGACCTCAAGAGTGAAGCCACTAGTGCTTTTCAAGAGGTATACGCGATGTACAAGAGGTTTCAAGCTGAGGAACTAATGGGTTATGGGTCAATTAGTGAATCACTCACCATAAAATTCCTGCTCGGAACAAGTGGATTGGTCCGGATTCAAGGTAAATGCCCAGCCAAATATGGTCTAAGCCGATTCCGAATGGAACGAGGAACAGAGGTGTGGAAAGTTGATTGCCCTTGTGGGGCCAAGGATGATGATGGAGAAAGAATGTTAGCATGTGACACTTGTGGTGTTTGGCAGCATACCAGATGCGCCGGAATTGATAATTCTGATGCTATGCCTTCCAAGTTTGTGTGTACGAGATGCGTTAACTCATATCGTCTGGAAGCTAAGAACTTGCCGGAGTGTGGTGGAGAATCTAACAAGTCTTGTAAATTTTTGAATACTTGTTGCAGAGATGAAGCTGTGGCAGCAGATTGTGCAGGAGTTGCTTGTAACATAACTGTGGATTTCGGTGTACGTTGA 2133 0.4763 MVVNERPSKRMKRRVTADLYDFLTFPSAAPDGAFRNCVQRFLADHARITFPPSLFPSLMTWQILFRVGELVDGPDLSPSVVTLDIVEEDVTRSRGSVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAIEGYQRPCSRCASLVQLSEPRCKSCNFDITADDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSDIMAFWDRLCTAISVRKVSVMDLSKKFGVEYRVLHAITNGHSWYGNWGYEFGSGSYALTQDAYQKAVNTLSATPLSSFSFQGRGLRNRLQCVISLYQSLAETELLTIKDLFSFLLTLIHELRKPMTKKTSTQNECASTCNLLCAWTRNDVEDVQQALIKVLLASAACSEAKWVSRRALKGAVCKGVAPPELLDYSLKHLQGKLAANGMVVRTRCNPISSAIEFRLETVRDILGADSSHPSEEQVISDLSFLFDTIIHPGKMVNYSPKIMRKRVADSARKLLDCKQFMKDYKPDVVAVELPSVIRLWCQVELSDQPKDDPSPPPELIVLPLNATVGDLKSEATSAFQEVYAMYKRFQAEELMGYGSISESLTIKFLLGTSGLVRIQGKCPAKYGLSRFRMERGTEVWKVDCPCGAKDDDGERMLACDTCGVWQHTRCAGIDNSDAMPSKFVCTRCVNSYRLEAKNLPECGGESNKSCKFLNTCCRDEAVAADCAGVACNITVDFGVR* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2469 710 Pfam PHD-finger 614 660 IPR019787 -
Dod03g2469 710 SMART PHD_3 613 659 IPR001965 -
Dod03g2469 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 682 - -
Dod03g2469 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 663 IPR013083 -
Dod03g2469 710 SUPERFAMILY FYVE/PHD zinc finger 603 661 IPR011011 -
Dod03g2469 710 ProSitePatterns Zinc finger PHD-type signature. 614 658 IPR019786 -
Dod03g2469 710 CDD PHD_MMD1_like 613 658 - -
Dod03g2469 710 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2469 Dod-Chr3 56259523 56263047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2469 7 658 PHD Transcription Factor Family AT5G22260 28.551 4.67e-91 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod03g2469 PHD 2.7e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2469 - - gmx:100780558 1169.84