Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2468 ATGGCCCAACAGTCGTCTAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAAATTGGGGATATTGCAAAATCACACCCTCAAGACTTGAGCAGTCTTCTTAAGAAGGTTTTGCAATATCTGTGCAGTAAAAATTGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGTTTGGCTGAACTTATTGATTCTGTTGTATCAAAAATGTCTGAGAATGGGATATCTTGTAGTGTGGAGGATCTGTGTGCATGGCCTTATTTGCAATCAAGAATTACAGGAAGCTCATTTAGAAGTTTTGATATCAACAAGGTGCTCGAATTTGGAGCTTTATTGGCATCAGGAGGACAGGAATATGATATTGGAAGTGATAGCATAAAGAACCCAAAGGAACGATTGGTTCGCCAGAAGCAAAATCTTCGATGCCGTTTAGGTTTGGATGTATGTGAACAATTTATGGACATCAGTGATGTAATAAGAGATGAAGATCTTATGGCACACAGATCAGACTCACATCTCAATGGAATAGATCATAGAGTTTTTACTTCTTGTTCTGTACACAACATCCAGACAATGGTTGCAAACATGGTTCCTAATGTAAGATCAAAGTGGCCAAGTGCAAGAGAACGGAATCTTTTAAAGCGCAAAGCAAAAATAAACTCAAAGGACCAAACAAAAACCTGGTTTGAAGATGGAGGTACAGAGCCATCAGGTGCTCAAAATTTGGCTTCTAAAGTCACCTGTGCTGATTCAGTAAATTATAACAAGGCATGTGTGGATGTTAATCATGATGAAGATGGCATTGACCATGATGGTGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGAGATGTTCGATCCTGTTTGGGAGGTCCGGCATGGTAGTGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGGATATTTAAACAGGACTCGCGCCTGGGTGGGACGTTCTTTGTTGAATCAGAAGACAAAAGTATGTCAAATATATTGAAGAGAGAGAGGGAGATTGATTTGAATATGCAAGTTTATTCAGATGAATTTGAGTCAAACTTGAAGAGGCCAAAGCTTGAAAATGTTGCACCATCGACCTCTATGGATAGTGTGATGACTTGCAACAATGAAGGTGATATTGACATCATCGTTAGTTCTGAAATCCCTGGATGTGATTTACCTTTGGATTGTGGAAATTGGCAATTCAATGGCAATTCTGTTGAGATGGATCTGGAATCTTACACTGATTGTTTGCAAAATGCGTCTAAGGAATCTGCTAATATGGCAGAGCAGAAGGGTTATTCTGATGACAATAAGTTGCCCTCTGGAAATCTTCCTCAGAATTCTGAGCTGATGAACTTGGTTAATGTGGCTAGAAGTTCCTGGCTTCGAAACTGTGGATTTCTTCAAGATTGTGTGATACGTTTTTTGTGTGTGTTGTCACTGGACCGCTTTGGAGATTACATATCTGATCAGGTTGTTGCTCCGGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTACATGCACCCAGCACTAGTAAATGAAACGTTGAACATACTGTTGCAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTAGTTGCTGTGCGGCAGGAGATGCTTCCTGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCGATTGTCGCCTTGCAGGGTCAAACATTGTACACAATCGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCTACTAGCAGTGTAATGAATCTGCTGGCAGAAATTTATTCTCAAGAAGATATGGTCCCCATGATGTATAGAGTTATTAGATTGGGAGACGAGGAAATATCTATTCAAAATGGAGTTGGTGGTGATGATGATGATGAAGAAAATCCTTATGTGCTTTCAACATTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACTTCCGTCCGGTATTCAGCAATACGGACTCTGGAGAGGTTACTTGAAGCTGGATACAAGAGAAGCATGTCTGAACTGTCTAATACTTCATTTTGGCCCTCTTCTATTTTTGGGGATACCCTTAGAGTTGTATTTCAGAATCTGCTATTGGAAACAAACGAGAATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGATACTGCTGCGAGATCTTACATGACTTCTTGGATAGAACTTGCATCTACACCGTTTGGTTCAGCATTGGATGCCTCAAAGATGTTTTGGCCTGCTGCATTTCCAAGAAAAAGTCAATTTAGAGCTGCTGCTAAAATGAGAGCTGTGAAGATTGAAAATGATTGCAGTGTGGATCTAGGTTTTGATTCCACAAAAGGAACTATTCCACAAGATAGAAACGGAGACGCTGCTATGAATTCAATGAAGATAGTTGTTGGTGCTGATGTAGACACCTCTGTTACTCATACTCGGGTGGTTACGGCAACTGCATTGGGAATTTTTGCTTCTAAACTGCCCAAGAGTTCTTTAAACTATGTAATTGATCCACTGTGGAGATCTCTAACCTCTTCGTCTGGTGTCCAACGCCAGGTTGCATCGATGGTACTAATTTCTTGGTTCAAGGAGATTAAGAGCACAAGTTCATCCAAAAACCCTAACGGTATTCCTGGAACCGTCAAAGATTGGTTGCTGGACTTATTAGCATCCTCTGATCCTGCATTGCCAACAAAAGATTCACGTCTTCCTTATGCTGAGCTTTTAAGAACCTATTCAAAGATGCGTGGTGAGGCTGGTCAATTACTAAATGCTATCAAGTCTTCTGGTATGTTTAATGAGTTATTGTCAACTACTGAAATTGAGTTGGATAGCTTAAGTGTGGATGATGCCATTAGTTTTGCATCAAAAATTCCAGCAGCATGTAATGATAGTCTTGCAAATGATTCCTTGGTAAAGAATACTATAGATGATATTGAATCCACAAAACAAAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACAGTCTCATCTGCAGTTGCAGCTGCAGTTGTTTGGATGTCTGAATTTCCTACACGACTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAGAAGAGAGCAGGAGGAAATACTGCAATTGAAGTCTGCTGAGGCACTTGCTGAGCTAATGTATCATTGTGTTGCACGTAGACCATGCCCCAATGATAAATTAATTAAGAATATATGCAGTTTGACATGCATGGATCCTTCTGAGACCCCACAAGCTAAATTCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTGGAACTCCTGTGAGCAAACATAAGTCAAAGGTCCATGTTTTGGCTGGTGAAGACCGATCAAAGGTGGAGGGGTTTATAAGTAGACGTGGGTCTGAAATAGCATTGAGGCTTTTATGCCAGAAGTTTGGTGCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTCACTGAGGTGCTTAAGCCAAGCTCCTCTGAAACTTCAACAGTCACTAATGAAAAACAAGTCACTCTGGGTGTGGCGTCTGTAAGCGATCCCCAGACATTGATTAACAATATTCAGGTGGTAAGATCTATTGCTCCCATGCTAAATGAGGAGTTGAAGCCGAAACTGTTGACACTTCTCCCGTGCATTTTTAAATGCATTCAACATCCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCAGGTCACTGACTGTGAAAGTCATGGGAGCTGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGCCTTGGTGTAGAGTTGGTCCCTTATGCTCCTCTGTTGGTTGTTCCACTTCTAAGGTGTATGAGTGACTGTGATCAGTCTGTCAGACAGATTGTAACCCATAGTTTTGCTGCTCTTGTACCTTTGCTACCTTTAGCACGAGGCCTTCCTCAACCAATTGGATTAGGAGAAGGTATATCTAGAAATGCAGAAGATTTGCAATTTTTGGAGCAACTACTTGACAACTCTCACATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTACCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTACAAGCATCAGCAATTGTGGCCTCTGACATTGCCGAGCATCGAACTCCAATTGGAAATGAGGATCTCCTACCATCCTTAATTATTTGCCCATCAACGCTAGTTGGACACTGGGCCTTTGAGATTGAGAAGTATATTGATGTTTCAGTTCTATCTAGTCTTCAATATGTTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATCATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTTTTGTGGAATTACTGTATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCTAAAGTTACCCTTGCTGTAAAACAGTTGAAAGCCCAACACCGATTGATATTGAGTGGGACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCGACGTACGGAAAACCACTTTTAGCTGCAAGAGATCCAAAGTGCTCTGCTAAAGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGCCATGCCTTTCCTCCTTCGTCGAACAAAGGATGAAGTCCTGTCTGATTTGCCTGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTATGAGCAGTTTTCTGGTTCTCGTGCAAAACAAGAAATGTCATCCCTTGTGACGACGAATGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTTCAACTAGAGCATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTGAAGCTGTGTAGTCATCCATTGCTTGTCGTTGGTGAGAAGATTCCAGATTCAATCTCAACCATCCTCTCAGGACTGTTGCCGTCTGGTTCTGACGTCATTTCAGAGCTTCACAAACTTCATCACTCCCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTGCTGTTAGCATTGGGCAGCACAGGGTCTTGATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAGAGACCTGTTTCAGACACACATGAAAAATGTCACATACTTGCGGCTTGATGGATCAGTTGAACCAGAAAAGCGTTTTGACATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACACGTGGGTGGGCTTGGTTTGAATCTGACATCTGCAAATACTCTTGTTTTTGTGGAGCATGACTGGAACCCAATGCGAGATCATCAGGCTATGGATAGAGCACACAGGCTAGGTCAGAAAAAAGTAGTTAATGTCCACCGCCTAATAATGCGTGGCACTTTGGAAGAGAAAGTTATGAGCTTACAAAGGTTCAAAGTTTCTGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACGATGAATACAGATCAGCTGCTTGATTTGTTTGCTTCGGCAGATACCTCCAAGAAGAAGGGAGCTGCTGTTGCGAAGAGTTCGGAGAACAACCCTGATGGAGACACGAAATTGGTAGGCAGTGGGAAGGGGTTGAAAGCCATACTCGGGGGATTGGAGGAGCTATGGGACCAATCACAATACACAGAGGAGTACAATCTGAGTCAATTTTTGGCAAAGCTTAATGGTTGA 6138 0.4174 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLSSLLKKVLQYLCSKNWDTRVAAAHAIGSIAENVKHISLAELIDSVVSKMSENGISCSVEDLCAWPYLQSRITGSSFRSFDINKVLEFGALLASGGQEYDIGSDSIKNPKERLVRQKQNLRCRLGLDVCEQFMDISDVIRDEDLMAHRSDSHLNGIDHRVFTSCSVHNIQTMVANMVPNVRSKWPSARERNLLKRKAKINSKDQTKTWFEDGGTEPSGAQNLASKVTCADSVNYNKACVDVNHDEDGIDHDGDGQWPFHTFVEQLIIEMFDPVWEVRHGSVMALREILTHQGASAGIFKQDSRLGGTFFVESEDKSMSNILKREREIDLNMQVYSDEFESNLKRPKLENVAPSTSMDSVMTCNNEGDIDIIVSSEIPGCDLPLDCGNWQFNGNSVEMDLESYTDCLQNASKESANMAEQKGYSDDNKLPSGNLPQNSELMNLVNVARSSWLRNCGFLQDCVIRFLCVLSLDRFGDYISDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLQMQCRPEWEIRHGSLLGIKYLVAVRQEMLPDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLYTIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMVPMMYRVIRLGDEEISIQNGVGGDDDDEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSNTSFWPSSIFGDTLRVVFQNLLLETNENILQCSERVWSLLVQCSVEDLDTAARSYMTSWIELASTPFGSALDASKMFWPAAFPRKSQFRAAAKMRAVKIENDCSVDLGFDSTKGTIPQDRNGDAAMNSMKIVVGADVDTSVTHTRVVTATALGIFASKLPKSSLNYVIDPLWRSLTSSSGVQRQVASMVLISWFKEIKSTSSSKNPNGIPGTVKDWLLDLLASSDPALPTKDSRLPYAELLRTYSKMRGEAGQLLNAIKSSGMFNELLSTTEIELDSLSVDDAISFASKIPAACNDSLANDSLVKNTIDDIESTKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQLKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKFICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKVEGFISRRGSEIALRLLCQKFGALLFDKLPKLWDCLTEVLKPSSSETSTVTNEKQVTLGVASVSDPQTLINNIQVVRSIAPMLNEELKPKLLTLLPCIFKCIQHPHVAVRLAASRCITSMARSLTVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQIVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTPIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVLSSLQYVGSAQDRMLLRDHFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRAKQEMSSLVTTNESAAAEGSSSSTRASSHVFQALQYLLKLCSHPLLVVGEKIPDSISTILSGLLPSGSDVISELHKLHHSPKLVALQEILEECGIGVDASGSEGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSANTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASADTSKKKGAAVAKSSENNPDGDTKLVGSGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2468 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1976 IPR044972 GO:0003677|GO:0016887|GO:0017025
Dod03g2468 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1460 1630 IPR014001 -
Dod03g2468 2045 Gene3D - 1420 1679 IPR038718 -
Dod03g2468 2045 Pfam Domain of unknown function (DUF3535) 777 1231 IPR022707 -
Dod03g2468 2045 Gene3D - 1177 1406 IPR011989 -
Dod03g2468 2045 Gene3D - 3 96 IPR011989 -
Dod03g2468 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1816 1976 IPR001650 -
Dod03g2468 2045 Pfam HEAT repeat 1290 1319 IPR000357 GO:0005515
Dod03g2468 2045 Pfam HEAT repeat 45 74 IPR000357 GO:0005515
Dod03g2468 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1430 1680 IPR027417 -
Dod03g2468 2045 SMART helicmild6 1840 1926 IPR001650 -
Dod03g2468 2045 CDD SF2_C_SNF 1795 1937 - -
Dod03g2468 2045 Pfam SNF2-related domain 1466 1762 IPR000330 GO:0005524|GO:0140658
Dod03g2468 2045 Gene3D - 1690 2005 IPR027417 -
Dod03g2468 2045 SUPERFAMILY ARM repeat 6 1487 IPR016024 -
Dod03g2468 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1681 1982 IPR027417 -
Dod03g2468 2045 CDD DEXHc_Mot1 1448 1680 IPR044078 GO:0005524
Dod03g2468 2045 Pfam Helicase conserved C-terminal domain 1826 1926 IPR001650 -
Dod03g2468 2045 SMART ultradead3 1444 1641 IPR014001 -
Dod03g2468 2045 Gene3D - 502 683 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2468 Dod-Chr3 56233721 56255785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2468 1443 1981 RAD5 or RAD16-like Gene Family AT1G02670 26.644 2.79e-43 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod03g2468 DUF3535 1.8e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2468 K15192 - gmx:100777977 3466.78