Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2456 ATGCAACGCACGCCTGGCGCCGGCAGCGGAAGCGGAAGCGTTGGCGGTGGCGGTGGCGGTGGAGGGCTTGCCCGGTTCCGTTCAACTCCGGCGAGCTGGTTAGAAACACTTCTGCTTAAAGAGGAAGTGGAAGAAATGGAAGAAGAAGAAGGAGAAAGAGAAGATCCGTTGGGGTTGAACAACAGCAGCAACCAGGGCTTCACTCAGCTGCTGTCATCCGGTGACCCTGTTGGGTTTTTCCGGCAGAATAGTTCCCCCGCCGAGTTTCTTGGCAACTCCGTGTTCGACTCTCAACACTACATATCCAAGTGTGACTACGACTACGCCTCCCCAGATACTAATAATAATATTCATCTTTCTCCCACCGCTAATCCTGATCCAATCCCACTGGAAATAGAGCAGGGTGGTAAAGCAGGTGAGGTGAAAGTGGAGAGGATTCTAGAGGACTCGGTGCCTTGTAGAGTTCGGGCAAAGCGTGGCTGTGCTACGCATCCAAGGAGCATTGCTGAAAGGGTTCGGAGGACCCGTATCAGTGACCGCATCAGAAAGCTGCAAGAACTAGTGCCAAACATGGATAAGCAAACAAATACTGCAGACATGTTAGACGAGGCAGTAGCTTATGTCAAGTCTCTACAAAAGCAGATTGAGGAACTATCAGAGCAGCAACGGAGGTGTAAATGTATGGTTCAAGAGTAA 696 0.5101 MQRTPGAGSGSGSVGGGGGGGGLARFRSTPASWLETLLLKEEVEEMEEEEGEREDPLGLNNSSNQGFTQLLSSGDPVGFFRQNSSPAEFLGNSVFDSQHYISKCDYDYASPDTNNNIHLSPTANPDPIPLEIEQGGKAGEVKVERILEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELSEQQRRCKCMVQE* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2456 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
Dod03g2456 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 229 IPR036638 GO:0046983
Dod03g2456 231 SMART finulus 167 217 IPR011598 GO:0046983
Dod03g2456 231 Gene3D - 162 231 IPR036638 GO:0046983
Dod03g2456 231 MobiDBLite consensus disorder prediction 40 68 - -
Dod03g2456 231 MobiDBLite consensus disorder prediction 1 26 - -
Dod03g2456 231 Coils Coil 201 231 - -
Dod03g2456 231 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Dod03g2456 231 PANTHER BNAA05G18250D PROTEIN 19 229 - -
Dod03g2456 231 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2456 Dod-Chr3 56052818 56056515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2456 25 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 45.306 1.08e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod03g2456 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2456 - - adu:107477635 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2456 03 56052818 56056515 Dod03g2456 03 56052818 56056515 ECH