Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2450 ATGGCTGCTTCCACAGCTGCTACCCATCTTGTATTATTGTACAATCCCATATTAGGAAACAACCCAGCAAGAGGAGCAAGGTTGTTGAGAGCAAGATCAGCCATAAACACTCATTACAATTGCTGTTTGGAGGTGCAGGCTTCGCAGGGCCCTGCGGGCACCCGCAGACCCCAGAGAACACCCCCTGGAGTTGACACGAGAATCCATTGGGACAACGAAGATGACGGTTGGATTGGAGGCACCAACACCGACAAACAGCAACAACCCACCGCCGATGACAAGGACCCCAAGAACCTCCTGGGTGAAAATTTTGCTGATTTGCTCAACGCTTCTTCAGGTTCTCATTACGAATTCCTAGGAGTATCAGCAGATGCGGATTTAGAAGAAATCAAAGCAGCTTACCGGAGATTATCAAAAGAGTACCATCCAGACACAACTTCGCTCCCTCTAAAAACTGCTTCAGAAAAATTCATGAAATTGAGAGAGGTTTACGACGTCCTCAGCAACGAAGAAAGTCGAAGGTTTTATGATTGGACGCTTGCTCAAGAGGCTGCGAGCCGCCAAGCTGAGAAGATGAAGATGAGATTTGAGGATCCTTATGAGCAAGATGTGAAGAACTGGGAACCGGTTCCAGACATGGTTGACAGGCTCGATGGAAGGAATATAAAGCTCGGTGATCAAGCAACTTCTGCCCTCACTATTGATGTCTTCATCGTTATTTTCGCCATATGTTGCATCATTTATGTAATATACTTCAAAGAACCATATTACTAA 774 0.4599 MAASTAATHLVLLYNPILGNNPARGARLLRARSAINTHYNCCLEVQASQGPAGTRRPQRTPPGVDTRIHWDNEDDGWIGGTNTDKQQQPTADDKDPKNLLGENFADLLNASSGSHYEFLGVSADADLEEIKAAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYDVLSNEESRRFYDWTLAQEAASRQAEKMKMRFEDPYEQDVKNWEPVPDMVDRLDGRNIKLGDQATSALTIDVFIVIFAICCIIYVIYFKEPYY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2450 257 ProSitePatterns Nt-dnaJ domain signature. 157 176 IPR018253 -
Dod03g2450 257 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 31 256 IPR044618 -
Dod03g2450 257 Coils Coil 150 170 - -
Dod03g2450 257 MobiDBLite consensus disorder prediction 48 97 - -
Dod03g2450 257 SMART dnaj_3 113 172 IPR001623 -
Dod03g2450 257 PRINTS DnaJ domain signature 116 134 IPR001623 -
Dod03g2450 257 PRINTS DnaJ domain signature 134 149 IPR001623 -
Dod03g2450 257 PRINTS DnaJ domain signature 152 172 IPR001623 -
Dod03g2450 257 SUPERFAMILY Chaperone J-domain 113 183 IPR036869 -
Dod03g2450 257 Pfam DnaJ domain 115 177 IPR001623 -
Dod03g2450 257 CDD DnaJ 115 169 IPR001623 -
Dod03g2450 257 Gene3D DnaJ domain 104 201 IPR036869 -
Dod03g2450 257 ProSiteProfiles dnaJ domain profile. 114 180 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2450 Dod-Chr3 55973991 55975024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2450 115 182 C2H2 Transcription Factor Family AT1G74250 37.500 4.64e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2450 K23051 - tcc:18610266 323.553